Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq157 152 4e-32 >seq157 Length=153911 Score = 152 bits (168), Expect = 4e-32 Identities = 350/522 (67%), Gaps = 20/522 (4%) Strand=Plus/Minus Query 97120 ACATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCTAGT 97179 || || || ||||||||||| |||| || |||| ||||| |||||||| || |||| Sbjct 125432 ACTTGTGCCATCATACAAGTCAATAAAGCATAGGATGCAATATTAAAAGGTACTCCTAAA 125373 Query 97180 CCCATATCAGCTGATCTTTGATATAACTGACA--GGAAAGCTT-TCCATC---ACACACA 97233 ||||||||| |||||||||||| | ||||| || ||| | ||| | ||| Sbjct 125372 CCCATATCACATGATCTTTGATACATTTGACAACTCAATTCTTGTGTATCTGTATCCACC 125313 Query 97234 TAAAACTGACTCAATACATGACAGGGGGGCAACGCCATTTTTGGAACATCTAAGACATTC 97293 | || |||| |||| |||||| || || | ||||||| || | |||| | |||||| Sbjct 125312 CAGAATTGACATAATAAATGACAAGGTGGAAGTGCCATTTGAGGTAAATCTGAAACATTC 125253 Query 97294 CAAGCACACATCAACATTCTTCTATCGGTTGGGTTTGTG-TGTATGGTATTAATTATCTG 97352 || ||| | | | ||||| | || |||| || ||||| | ||||||| | || Sbjct 125252 CATGCAGAGAGAATAATTCTACGATTGGTT-GGATTGTGACGAATGGTATCGACACACTT 125194 Query 97353 CTTTAATTGATCAACGCCTTCTCCACCATAATTGTGCTTAAGACCTTGATATTCTGCTCC 97412 || |||||||||| |||| | | |||||| | | || ||| | ||| || Sbjct 125193 TTTCAATTGATCAATACCTTTTTGAGAATAATTAGTATGCATGGTTTCATAGTGTGCACC 125134 Query 97413 AAAATGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCTCTATCACAGAA 97472 |||| |||||||| |||||||| || ||||| | || ||||| | || | || Sbjct 125133 CCAATGTCTCCATTGAAATCCATAGACTGGTCCTAAATCCATCTCTTCACGATGAGTCAA 125074 Query 97473 ACCAAGCTTATCTAAATAGGACCTAGATCCATTTGCATCCCAAATGTGCACACC------ 97526 |||| ||||||||| | | | |||| ||||||||||||| ||| | Sbjct 125073 TCCAATGGAATCTAAATATTGTCGACTTGCATTGCCATCCCAAATGTGAACATCTTGTGA 125014 Query 97527 AGATGCTGCAAGCTCTTTGCTGTCAGTAGATCCTCTGATAAACCACAACAATTCTTCCAC 97586 ||| | | | | ||| | ||| ||| ||| ||||| | ||||| | | Sbjct 125013 AGAGAGAGTACGTGCATTGGTATCACCAGA------GATGAACCAAAGTAATTCCTTTGC 124960 Query 97587 AACACCTCTCCAAAATACTCTCTTAGTTGTTAAGAGAGGAAA 97628 ||||||| ||||||| |||||||| || || | |||||||| Sbjct 124959 AACACCTTTCCAAAAGACTCTCTTGGTGGTGAGAAGAGGAAA 124918 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346781574029180