Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq38 141 1e-28 seq42 140 5e-28 seq157 138 2e-27 seq29 118 2e-21 seq82 114 2e-20 seq76 104 4e-17 seq26 89.7 8e-13 seq151 84.2 3e-11 >seq38 Length=237352 Score = 141 bits (156), Expect = 1e-28 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||| |||| | || ||||| ||||| | ||| || || | || |||| | || Sbjct 109520 AATGCAATTATTCGTTAAAACACTTACAGGTAGAACAATCACATTGGATGTTGAGTCCAA 109461 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| | ||| ||| | ||||||||||| |||||| ||||| || ||| ||||||| Sbjct 109460 TGACTCGATTGAGAATGTTAAACAGAAAATCACAGATAAGGAAGGCATTCCAGCTGATCA 109401 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||| | | |||| ||| |||||||||||||||||| | |||| ||| ||||| || Sbjct 109400 ACAACGTTTGATTTATGCTGGAAAACAATTAGAGGATGGAAGAACTTTATCGGATTACAA 109341 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 | | ||||| || | ||| | || ||||| || | ||||| |||||||| Sbjct 109340 TGTACAAAAGGATGCTACTCTTCACTTGGTGTTGAGATTACGTGGTGGTAT 109290 >seq42 Length=292872 Score = 140 bits (154), Expect = 5e-28 Identities = 171/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | || || | || || || || || ||| | ||| |||| | ||| Sbjct 165712 ATGCAAATCTTCGTTAAAACCTTGACCGGAAAGACCATTACTCTTGAGGTTGAGTCCAAT 165771 Query 124599 GATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| ||| || ||||| || || || ||||| || ||||| || ||||| || || Sbjct 165772 GATACCATTGAAAACGTTAAATCA-AAGATCCAAGACAAGGAAGGAATTCCACCAGACCA 165830 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||||| || || ||||| ||||| |||||||| || | |||| || ||||| || Sbjct 165831 ACAAAGACTCATCTTTGCCGGAAAGCAATTAGAAGACGGAAGAACCTTGTCTGATTACAA 165890 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||||||||||||||| ||||| |||||||| | | |||||||||| Sbjct 165891 CATTCAAAAAGAATCAACATTGCACTTGGTTTTGAGACTCAGAGGTGGTAT 165941 Score = 113 bits (124), Expect = 7e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | ||||| || || || || ||||| ||| | || | ||| | || Sbjct 165484 ATGCAAATCTTCGTCAAGACCCTCACTGGTAAGACTATCACTCTCGAAGTCGAATCCAAC 165543 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| || | ||| || || ||||| || ||||| || |||||||||||| Sbjct 165544 GACACGATTGAGAACGTGAAAAGCAAGATCCAAGACAAGGAAGGAATTCCACCTGATCAA 165603 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | | |||||||| || |||||||| || || | |||| || || || || Sbjct 165604 CAACGTTTGATTTTTGCTGGTAAACAATTGGAAGACGGAAGAACCTTGTCCGACTACAAC 165663 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||| ||||| ||| | || ||||| || | || |||||||||| Sbjct 165664 ATCCAAAAGGAATCCACTCTCCACTTGGTCTTGAGATTGAGAGGTGGTAT 165713 Score = 100 bits (110), Expect = 4e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | ||||| || || || || || || ||| | || ||||| | || Sbjct 165940 ATGCAAATCTTCGTCAAGACCCTCACTGGTAAGACAATTACTTTGGAAGTTGAATCCAAC 165999 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || || || | || || ||||||||||| |||||||| ||||| |||||| Sbjct 166000 GACACCATCGAAAACGTGAAGAGCAAGATTCAAGATAAGGAAGGTATTCCACCAGATCAA 166059 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | | |||||||| || |||||||| || || | |||| | || || || Sbjct 166060 CAACGTTTGATTTTTGCTGGTAAACAATTGGAAGACGGAAGAACTCTCTCCGACTACAAC 166119 Query 124719 ATTCAAAAAGAATCAACTTTGCA 124741 |||||||| ||||| || ||||| Sbjct 166120 ATTCAAAAGGAATCCACATTGCA 166142 Score = 91.5 bits (100), Expect = 2e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| ||| | || || | || ||||| || || || | || | ||| | || Sbjct 166167 AATGCAAATCTTTGTTAAAACTTTGACTGGCAAGACCATTACATTGGAAGTCGAATCCAA 166226 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 |||||| || ||| | || || || |||||||| ||||| || || || || || Sbjct 166227 TGATACCATCGAGAATGTCAAGTCAAAGATCCAAGATAAGGAAGGCATTCCTCCAGACCA 166286 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||||| | ||||| || || || ||||| || ||| | |||| | ||||| || Sbjct 166287 ACAAAGATTGATTTTCGCTGGTAAGCAATTGGAAGATGGAAGAACCCTCTCCGATTACAA 166346 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTT 124750 ||||||||||| || ||| | || | ||||| Sbjct 166347 CATTCAAAAAGAGTCTACTCTTCACCTTGTTTT 166379 >seq157 Length=153911 Score = 138 bits (152), Expect = 2e-27 Identities = 312/461 (68%), Gaps = 15/461 (3%) Strand=Plus/Minus Query 205330 AATTTTGGAAATGGGTTTGGTGTACGTTCTAATTGtttttttAATCCATTAATATGATTA 205389 ||||||||||| | || || | | ||||||||| ||| ||| | ||||||||| Sbjct 125549 AATTTTGGAAAGTGTTTGGGATTTCTCTCTAATTGTACTTTCAATGGTTCAATATGATTC 125490 Query 205390 ACATATATATGTGCATTACCAATATTATGAATAAATTCATATGGTTTTAAATTAGTTAAA 205449 ||| | ||| || |||| | ||| | ||| ||| |||||| || | || Sbjct 125489 GAATAGACATGACAATCACCACAACAATGTACAAAATCACCTGGTTTCAATCCACATACT 125430 Query 205450 TGTGCAATCATATAAGTCAATAAACTATAACTAGCAACATTAAATGGTACACCTAAACCC 205509 ||||| |||||| ||||||||||| ||| |||| |||||| ||||| ||||||||| Sbjct 125429 TGTGCCATCATACAAGTCAATAAAGCATAGGATGCAATATTAAAAGGTACTCCTAAACCC 125370 Query 205510 ATATCAGCTGATCTTTGATACATTTGACATGTAAGATATT---TATTATTAATTACATGA 205566 |||||| ||||||||||||||||||||| | | | || ||| || || Sbjct 125369 ATATCACATGATCTTTGATACATTTGACAACTCAATTCTTGTGTATCTGTATCCACCCAG 125310 Query 205567 AATTGTACA-AAACAATGACAAGGTGGTATAACCATATTTTCAACATCTATAGGATTCCA 205625 ||||| ||| || ||||||||||||| | |||| | | |||| | |||||| Sbjct 125309 AATTG-ACATAATAAATGACAAGGTGGAAGTGCCATTTGAGGTAAATCTGAAACATTCCA 125251 Query 205626 GGCTGTTAATATTATATTTCTA-GATTCAGGtt-tatttt---ttattttatttatAATA 205680 || | | | ||| ||||| |||| |||| ||| | || ||| | | Sbjct 125250 TGCAG---AGAGAATAATTCTACGATT--GGTTGGATTGTGACGAATGGTATCGACACAC 125196 Query 205681 TGTGTTAATTGATCAAATCCTTGATTTGTATAATTTGTATCCATATCAATATATTTAGCA 205740 | | | |||||||||| |||| | | |||||| |||| ||| ||| | ||| Sbjct 125195 TTTTTCAATTGATCAATACCTTTTTGAGAATAATTAGTATGCATGGTTTCATAGTGTGCA 125136 Query 205741 CCAAAATGACGCCATTGAAAACCATAAACTGGACCTAAATC 205781 || |||| | ||||||||| ||||| ||||| |||||||| Sbjct 125135 CCCCAATGTCTCCATTGAAATCCATAGACTGGTCCTAAATC 125095 >seq29 Length=427163 Score = 118 bits (130), Expect = 2e-21 Identities = 145/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | ||||| |||| ||||| ||||| ||| | || | ||| | || Sbjct 48555 ATGCAAATCTTCGTCAAGACTTTAACTGGCAAGACTATCACTCTTGAAGTCGAATCCAAC 48614 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || ||||| || | ||| || || ||||| || ||||| || |||||||||||| Sbjct 48615 GACACAATCGAGAACGTGAAAAGCAAGATCCAAGACAAGGAAGGAATTCCACCTGATCAA 48674 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||| || || ||||| ||||| |||||||| ||| | |||| || || || || Sbjct 48675 CAAAGACTCATCTTTGCCGGAAAGCAATTAGAAGATGGAAGAACCTTGTCCGACTACAAC 48734 Query 124719 ATTCAAAAAGAATCAACT 124736 |||||||| ||||| ||| Sbjct 48735 ATTCAAAAGGAATCCACT 48752 Score = 100 bits (110), Expect = 4e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| || | || || | ||||| || || || ||| | || ||||| | || Sbjct 49048 AATGCAAATTTTCGTGAAAACTTTGACAGGAAAGACCATCACTTTGGAAGTTGAATCTAA 49107 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || ||||| || | || || ||||||||||| || || || ||||| ||||| Sbjct 49108 CGACACAATCGAGAACGTCAAGTCAAAGATTCAAGATAAGGAGGGGATTCCACCAGATCA 49167 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||| | | ||||| || || || ||||| || ||| | |||| | ||||| || Sbjct 49168 ACAACGTTTGATTTTCGCTGGTAAGCAATTGGAAGATGGCAGAACCCTTTCCGATTACAA 49227 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTA 124767 || ||||| ||||||||| | || | ||| | | ||| ||||||||| Sbjct 49228 CATCCAAAAGGAATCAACTCTTCACCTTGTTCTGAGATTAAGAGGTGGTA 49277 >seq82 Length=211372 Score = 114 bits (126), Expect = 2e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 124536 ACAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCA 124595 ||||||||||| || | ||||| | || || || || || ||| | ||| | ||| | Sbjct 147935 ACAATGCAAATTTTCGTTAAGACCTTGACCGGTAAGACCATCACTTTGGAGGTCGAATCC 147876 Query 124596 AATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGAT 124655 || || || || ||| | || || |||||||| || |||||||| || || ||| Sbjct 147875 AACGACACCATCGAGAATGTCAAGTCAAAGATTCAAGACAAGGAAGGTATTCCTCCAGAT 147816 Query 124656 CAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTAT 124715 |||||||| | || ||||| ||||| ||||| || ||| | |||| || || || Sbjct 147815 CAACAAAGATTGATCTTTGCCGGAAAGCAATTGGAAGATGGCAGAACCTTGTCTGACTAC 147756 Query 124716 AATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766 || |||||||| ||||| || ||||| ||||| || | || |||| ||| Sbjct 147755 AACATTCAAAAGGAATCTACATTGCACTTGGTCTTGAGATTGAGAGGAGGT 147705 >seq76 Length=223365 Score = 104 bits (114), Expect = 4e-17 Identities = 110/145 (76%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 || || ||||| || |||||||| || || ||||||||||| | |||||||| || || Sbjct 84430 AAGATCCAAGACAAGGAAGGTATTCCTCCAGATCAACAAAGATTGATTTTTGCTGGTAAG 84371 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 ||||| |||||| | ||||||| || || || |||||||| ||||| ||| | || Sbjct 84370 CAATTGGAGGATGGCAGAACATTGTCTGACTACAACATTCAAAAGGAATCCACTCTCCAC 84311 Query 124743 TTGGTTTTACGTTTACGAGGTGGTA 124767 ||||| || | || ||||||||| Sbjct 84310 TTGGTCTTGAGATTGAGAGGTGGTA 84286 >seq26 Length=133099 Score = 89.7 bits (98), Expect = 8e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 124632 GATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAG 124691 ||||| ||||| || ||| | ||||||||| | | ||||| |||||||||||||||||| Sbjct 73155 GATAAGGAAGGGATTCCAGCCGATCAACAACGATTGATTTTCGCAGGAAAACAATTAGAG 73214 Query 124692 GATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGGTTTT 124750 ||| | |||| || ||||| | |||| || || || || ||||||||||| || Sbjct 73215 GATGGAAGAACCTTGTCTGATTACAGCGTTCAGAAGGATTCTACCTTGCATTTGGTGTT 73273 >seq151 Length=76492 Score = 84.2 bits (92), Expect = 3e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||| |||| | ||||| | ||||| || || || || || || || | ||| Sbjct 51037 ATGCAATTATTCGTCAAGACTTTGACAGGAAAGACCATCACGATTGAAGCAGAGTCCAAT 51096 Query 124599 GATACAATTTCTAATTTAAAACAGAAA-ATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || | ||| || | || ||||| ||| ||||| |||||||| ||| | ||||| Sbjct 51097 GACTCGATTGAGAACGTGAAG-AGAAAGATTTGTGATAAGGAAGGTATTCCAGCGGATCA 51155 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||| | | |||| || ||||||||||| |||||| | ||||| | || |||| Sbjct 51156 ACAACGTTTAATTTACGCTGGAAAACAATTGGAGGATGGAAGAACAGTTTCTGACTATAG 51215 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTT 124750 | |||||||| |||||| | ||| | ||||| Sbjct 51216 CTTGCAAAAAGATTCAACTATCCATCTTGTTTT 51248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755450579603200