Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= NC_002486.1 Length=45636 Score E Sequences producing significant alignments: (Bits) Value seq516 203 9e-48 seq513 132 1e-26 >seq516 Length=4294 Score = 203 bits (224), Expect = 9e-48 Identities = 133/144 (92%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 24687 AGGTTTTGTATTAATGGCACTTAATATAAGGAAAATAGTAGCTCGACGAGCTGTATATTA 24746 |||||||||||||||||||||||||||||||||||||| ||||| |||||| |||||| | Sbjct 2985 AGGTTTTGTATTAATGGCACTTAATATAAGGAAAATAGCAGCTCAACGAGCAGTATAT-A 3043 Query 24747 TCAAATACATTT-aaaaaaaGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTT 24805 |||||||||||| ||||||||||||||||||||||||||| ||||| |||||||||||| Sbjct 3044 TCAAATACATTTCAAAAAAAGCTGATTTCTATCAAATAATGAATAGTAATCAGCTTTTTC 3103 Query 24806 ACATTGCCTAAGAACTTAATGTCC 24829 |||||||||||| |||| ||| || Sbjct 3104 ACATTGCCTAAGGACTTTATGCCC 3127 Score = 199 bits (220), Expect = 1e-46 Identities = 132/144 (92%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 24687 AGGTTTTGTATTAATGGCACTTAATATAAGGAAAATAGTAGCTCGACGAGCTGTATATTA 24746 |||||||||||||||||||||||||||||||||||||| |||| |||||| |||||| | Sbjct 1364 AGGTTTTGTATTAATGGCACTTAATATAAGGAAAATAGCAGCTTAACGAGCAGTATAT-A 1422 Query 24747 TCAAATACATTT-aaaaaaaGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTT 24805 |||||||||||| ||||||||||||||||||||||||||| ||||| |||||||||||| Sbjct 1423 TCAAATACATTTCAAAAAAAGCTGATTTCTATCAAATAATGAATAGTAATCAGCTTTTTC 1482 Query 24806 ACATTGCCTAAGAACTTAATGTCC 24829 |||||||||||| |||| ||| || Sbjct 1483 ACATTGCCTAAGGACTTTATGCCC 1506 >seq513 Length=1269 Score = 132 bits (146), Expect = 1e-26 Identities = 76/78 (97%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 24754 CATTTaaaaaaaGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCC 24813 ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 CATATCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCC 60 Query 24814 TAAGAACTTAATGTCCCA 24831 |||||||||||||||||| Sbjct 61 TAAGAACTTAATGTCCCA 78 Score = 86.0 bits (94), Expect = 2e-12 Identities = 49/50 (98%), Gaps = 0/50 (0%) Strand=Plus/Plus Query 22891 GAGTCTGGGACATAAATCCCTaaaaaaaCAGCAGTAAGATAATTTTCAAT 22940 ||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1216 GAGGCTGGGACATAAATCCCTAAAAAAACAGCAGTAAGATAATTTTCAAT 1265 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 145912605416424