Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq76 116 6e-21 seq82 111 2e-19 seq38 105 1e-17 seq42 104 3e-17 seq139 98.7 1e-15 seq29 93.3 6e-14 seq120 89.7 8e-13 seq26 89.7 8e-13 >seq76 Length=223365 Score = 116 bits (128), Expect = 6e-21 Identities = 110/138 (80%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 |||||||| | ||| || ||||| || | ||| ||||| ||| || || || || || || Sbjct 84288 CCACCTCTCAATCTCAAGACCAAGTGGAGAGTGGATTCCTTTTGA-ATGTTGTAGTCAGA 84346 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | ||||||| ||| || ||||| || |||||||||||||||||||| ||||| ||||| Sbjct 84347 CAATGTTCTGCCATCCTCCAATTGCTTACCAGCAAAAATCAATCTTTGTTGATCTGGAGG 84406 Query 146170 AATTCCTTCTTTATCTTG 146187 ||| ||||| || ||||| Sbjct 84407 AATACCTTCCTTGTCTTG 84424 >seq82 Length=211372 Score = 111 bits (122), Expect = 2e-19 Identities = 109/138 (79%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 || ||||| | ||| || ||||| || || |||||||| ||| || || || || || || Sbjct 147706 CCTCCTCTCAATCTCAAGACCAAGTGCAATGTAGATTCCTTTTGA-ATGTTGTAGTCAGA 147764 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | ||||||| ||| || ||||| ||||| ||||| ||||||||||| ||||| ||||| Sbjct 147765 CAAGGTTCTGCCATCTTCCAATTGCTTTCCGGCAAAGATCAATCTTTGTTGATCTGGAGG 147824 Query 146170 AATTCCTTCTTTATCTTG 146187 ||| ||||| || ||||| Sbjct 147825 AATACCTTCCTTGTCTTG 147842 >seq38 Length=237352 Score = 105 bits (116), Expect = 1e-17 Identities = 162/233 (70%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAG-ATTCTTTAGATATATTATAATCTGA 146109 ||||| | | ||| || ||||| || | ||||| || |||| | || ||| ||||| || Sbjct 109293 CCACCACGTAATCTCAACACCAAGTGAAGAGTAGCATCCTTTTG-TACATTGTAATCCGA 109351 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | |||||| | ||| |||||||||||||||||| ||||||| | ||| ||||| | || Sbjct 109352 TAAAGTTCTTCCATCCTCTAATTGTTTTCCAGCATAAATCAAACGTTGTTGATCAGCTGG 109411 Query 146170 AATTCCTTCTTTATCT-TG-NNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCT 146227 ||| ||||| |||||| || ||| || || || Sbjct 109412 AATGCCTTCCTTATCTGTGATTTTCTGTTTAACATTCTCAATCGAGTCATTGGAC--TCA 109469 Query 146228 ACTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATTTT 146280 || || | |||||||||| ||||||| | |||||||| ||||| ||||||||| Sbjct 109470 ACATCCAATGTGATTGTTCTACCTGTAAGTGTTTTAACGAATAATTGCATTTT 109522 >seq42 Length=292872 Score = 104 bits (114), Expect = 3e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| ||||| || ||||| || || || |||||||| || || ||||| || Sbjct 165938 CCACCTCTGAGTCTCAAAACCAAGTGCAATGTTGATTCTTTTTGAATGTTGTAATCAGAC 165879 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||||| | || |||||||| ||||| ||||| || | |||||| || || || ||| Sbjct 165878 AAGGTTCTTCCGTCTTCTAATTGCTTTCCGGCAAAGATGAGTCTTTGTTGGTCTGGTGGA 165819 Query 146171 ATTCCTTCTTTATCTTG 146187 |||||||| || ||||| Sbjct 165818 ATTCCTTCCTTGTCTTG 165802 Score = 98.7 bits (108), Expect = 1e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| | ||| || ||||| || | ||| ||||| || || || || || || Sbjct 165710 CCACCTCTCAATCTCAAGACCAAGTGGAGAGTGGATTCCTTTTGGATGTTGTAGTCGGAC 165651 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||||| | || || |||||||| |||||||||||||| | ||| ||||| || ||| Sbjct 165650 AAGGTTCTTCCGTCTTCCAATTGTTTACCAGCAAAAATCAAACGTTGTTGATCAGGTGGA 165591 Query 146171 ATTCCTTCTTTATCTTG 146187 |||||||| || ||||| Sbjct 165590 ATTCCTTCCTTGTCTTG 165574 Score = 98.7 bits (108), Expect = 1e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || || || | ||| || || | || | |||||| ||||| || || ||||| || Sbjct 166394 CCTCCCCTCAATCTCAAAACAAGGTGAAGAGTAGACTCTTTTTGAATGTTGTAATCGGAG 166335 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || ||||| | ||| || ||||| || ||||| |||||||||||||| || || |||||| Sbjct 166334 AGGGTTCTTCCATCTTCCAATTGCTTACCAGCGAAAATCAATCTTTGTTGGTCTGGAGGA 166275 Query 146171 ATTCCTTCTTTATCTTG 146187 || ||||| |||||||| Sbjct 166274 ATGCCTTCCTTATCTTG 166258 Score = 96.9 bits (106), Expect = 5e-15 Identities = 107/140 (76%), Gaps = 2/140 (1%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCT 146107 |||| ||||| | ||| | || | || || || ||||| ||| || || || || || Sbjct 166168 TTCCTCCTCTCAATCTAAGAACAAGGTGCAATGTGGATTCCTTTTGA-ATGTTGTAGTCG 166110 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 || |||||||| | || || |||||||| |||||||||||||| | ||| ||||| || Sbjct 166109 GAGAGAGTTCTTCCGTCTTCCAATTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGT 166050 Query 146168 GGAATTCCTTCTTTATCTTG 146187 ||||| ||||| |||||||| Sbjct 166049 GGAATACCTTCCTTATCTTG 166030 >seq139 Length=139714 Score = 98.7 bits (108), Expect = 1e-15 Identities = 179/262 (68%), Gaps = 0/262 (0%) Strand=Plus/Plus Query 10342 CTGCAGGAATGGATTTAAAAAGTGCATATGATTATATTGTTTCAGCACATGATAAAAAAT 10401 |||||||| | ||||| ||| ||||||||| | ||| | ||| | |||| | Sbjct 139176 CTGCAGGATTTGATTTGGCTTCTGCCTATGATTATGTGGTTCCTGCAAGAGGTAAATGTT 139235 Query 10402 TAATAAAAACTGATTTAATTATAGAAATTCCTAAAGGATGTTATGCAAGATTAGCTCCCA 10461 | |||| || ||||| | | | ||||| | || | ||||| |||| | ||||| Sbjct 139236 TGGTAAAGACCGATTTGGCTGTTGCCGTTCCTCATGGTTATTATGGAAGAGTTGCTCCAC 139295 Query 10462 GATCTGATTTAGCTCTAAATAAATTTATTGATATTGGAGCTGGAGTAATTGACGAAGATT 10521 | || | || ||| | || || || || ||| |||| || || || | || |||| Sbjct 139296 GTTCGGGATTGGCTGTGAAGAATTTCATAGATGTTGGTGCAGGTGTTGTAGATTCCGATT 139355 Query 10522 ATAGAGGAAATGTGGGAGTAATATTATTTAATCATTCTAATGAAGATTTTATAATAAATA 10581 ||||||||||| ||||||| | ||||| || ||| | ||||||| |||| ||| | Sbjct 139356 ATAGAGGAAATTTGGGAGTGTTGTTATTCAACCATGGTGATGAAGACTTTAAAATTGCGA 139415 Query 10582 GAGGAGATAGAATATCTCAATT 10603 ||||||| |||| | ||||| Sbjct 139416 GAGGAGACCGAATTGCACAATT 139437 >seq29 Length=427163 Score = 93.3 bits (102), Expect = 6e-14 Identities = 105/138 (76%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 |||||||| ||||| | || | || | ||| ||||| ||| || || || || || || Sbjct 48781 CCACCTCTGAGTCTGAGGACAAGGTGGAGAGTGGATTCCTTTTGA-ATGTTGTAGTCGGA 48723 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | ||||| | ||| |||||||| ||||| ||||| || | |||||| ||||| || || Sbjct 48722 CAAGGTTCTTCCATCTTCTAATTGCTTTCCGGCAAAGATGAGTCTTTGTTGATCAGGTGG 48663 Query 146170 AATTCCTTCTTTATCTTG 146187 ||||||||| || ||||| Sbjct 48662 AATTCCTTCCTTGTCTTG 48645 >seq120 Length=320511 Score = 89.7 bits (98), Expect = 8e-13 Identities = 104/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAG-ATTCTTTAGATATATTATAATCT 146107 |||||||||| | |||||| |||||||| | |||| || |||| || | || || || Sbjct 60815 TTCCACCTCTCAATCTTAAGACCAAATGAAGGGTAGCATCCTTTTGA-ACGTTGTAGTCA 60873 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 || || ||||| | ||| || ||||| || || ||| | ||||| | || ||||| | Sbjct 60874 GAGAGTGTTCTTCCATCCTCCAATTGCTTGCCTGCATAGATCAAACGCTGTTGATCAGCT 60933 Query 146168 GGAATTCCTTCTTTATCT 146185 ||||||||||| |||||| Sbjct 60934 GGAATTCCTTCCTTATCT 60951 >seq26 Length=133099 Score = 89.7 bits (98), Expect = 8e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || || || | ||| || |||||||| || ||||| || || | | ||||| || Sbjct 73288 CCTCCCCTCAATCTCAACACCAAATGCAAGGTAGAATCCTTCTGAACGCTGTAATCAGAC 73229 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||||| | ||| |||||||||||||| || |||||||||| ||| ||||| | ||| Sbjct 73228 AAGGTTCTTCCATCCTCTAATTGTTTTCCTGCGAAAATCAATCGTTGTTGATCGGCTGGA 73169 Query 146171 ATTCCTTCTTTATC 146184 || ||||| ||||| Sbjct 73168 ATCCCTTCCTTATC 73155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743521065198080