Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq93 163 3e-35 >seq93 Length=103736 Score = 163 bits (180), Expect = 3e-35 Identities = 601/918 (65%), Gaps = 34/918 (4%) Strand=Plus/Plus Query 15885 TTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTT 15944 ||||||||||| ||| | ||| || || ||| | || |||||||| || ||| Sbjct 84514 TTTAAAAATCATCATCCAATCTAAAGACCTTCTCTCTCTTTGGTGACATAA-TG---TTT 84569 Query 15945 ---TTTG-ATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATA 16000 |||| |||||||| ||||||||| |||||||| || || || || | |||||| Sbjct 84570 GCCTTTGCATATTCACCAACTCTCTTCTCAAAGAAGTTCGTCTTACCAGACACTGAAATC 84629 Query 16001 TTTTCCATAAAATCAAAAGGATTTTTTGAACAA--TAGTATTTATCGCATCCCAATTCCA 16058 | | ||| |||| || ||||||| | |||| || ||||| |||| | || | Sbjct 84630 ATATTCATCCAATCGAATGGATTTT--GGACAAGGTAAACCTTATCATATCCTA--TCGA 84685 Query 16059 -ACAA-TAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCC 16116 |||| ||||| ||| || |||||||| || || |||| ||| | | | | ||||| || Sbjct 84686 GACAAGTAATCGATCAGCAACAAATTCAATGTATTGTTGCATGAGACGAGAATTCATACC 84745 Query 16117 TATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAAT 16176 || || | ||||||| | |||| | || | || || || | ||| |||||| | Sbjct 84746 AATCAAGTCCACAGGGAGAGATTCTCGAATGAATTCCTTCTCAATCTCAACAGCTTCACT 84805 Query 16177 GATTATATCTCT-TACTACACTATTTAACGGAG---GGTTTAATA-AGTGTTTAA-ACAT 16230 || | || | ||| || || ||| | | | ||| || | || | || ||| Sbjct 84806 GACCA-ATGAATGTACAAC-CT-TTTGAGGCAATTTGGTATATTTGAGCATGGAATACAA 84862 Query 16231 TATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGT 16290 | ||||||||| || || |||||||| || | | || || || || || || || Sbjct 84863 GAGACAAGCAAAGTCCGTGTGTAATCCTTCATCTCGAGAAATCAATTCATTGGAGAAGGT 84922 Query 16291 AAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAA 16350 | || ||||| | |||| || || |||||||| || | || || ||| ||| Sbjct 84923 CAATCCAGGCATCAAACCTCTCTTCTTCATCCAAAAGATGGAACAGAAAGATCCACTAAA 84982 Query 16351 GAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttact 16410 ||| |||||||| || ||||| |||| |||||| ||| | || ||| | | Sbjct 84983 GAAGATACCTTCCACACAAGCAAAGGCAATCAATCGTTCAGCAAACAAGTTATCCG-AGT 85041 Query 16411 ttctatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGC 16470 | |||||||| ||||||| || || | || ||| | | | || || || Sbjct 85042 TG--ATCCATTTCAAAGCCCAACGAGCCTTCTTTTGAACGGATGGAACAGTATCAATGGC 85099 Query 16471 ATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATA 16530 ||| || | | || | ||||| | | || ||| || || || ||||| ||| Sbjct 85100 ATTGAAGAGACGATGTCTTTCTCTCGTGTCCTTAATGTAGGTTTCAATTAGAGTTGAATA 85159 Query 16531 CATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGA 16590 ||| |||| |||||||||||| || || || || || ||||| || ||||| ||||| | Sbjct 85160 CATCTCTGCATGAATATTCTCAATGGCAATTTGGAATCCATAGAAACATCTGGCTTCAGG 85219 Query 16591 TATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGC 16650 ||||| ||||||| ||| || ||||| || || || || |||||| || Sbjct 85220 AATTTGAACTTCAGCCATAAATTGTTGACACAAGTTCTCATTCACAATACCATCGGAGGC 85279 Query 16651 TGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttC---GTTATCTGAAAGTTTTAA 16707 ||||| || || | | || || || | || ||| | ||| ||| ||||| Sbjct 85280 AGCAAAGAAGGCCAAAACAGTCTTGATGAAGTGTTGTTCATTGGTAT-TGAGAGTTT--C 85336 Query 16708 CCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGC 16767 ||| | || || |||| | | ||| || ||||| ||||||| ||||| || | || Sbjct 85337 CCATTGAGCAATATCTGTGTGGAGATCCACTTCTTCAGCAGTCCAGAAAGATGCCATGGC 85396 Query 16768 CTTTTTATACATTTTCCA 16785 ||| || ||||| | ||| Sbjct 85397 CTTCTTGTACATCTCCCA 85414 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462508681476400