Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq157 176 4e-39 >seq157 Length=153911 Score = 176 bits (194), Expect = 4e-39 Identities = 403/603 (67%), Gaps = 8/603 (1%) Strand=Plus/Plus Query 20179 CAATTTTTACACAGCAATGGATTTGACA-ACCGTCAAGAGGGGGATTTGGGTCCTGTGTA 20237 |||| |||| | || |||||| ||| | ||| ||||| |||||| || || || || Sbjct 125053 CAATATTTAGATTCCATTGGATT-GACTCATCGTGAAGAGATGGATTTAGGACCAGTCTA 125111 Query 20238 TGGATTTCAATGGAGACATTTTGGAGCTGAATATGTTGACATGAACACAAATTATTTTGG 20297 |||||||||||||||||||| || || | |||| |||| | || ||||||| | Sbjct 125112 TGGATTTCAATGGAGACATTGGGGTGCACACTATGAAACCATGCATACTAATTATTCTCA 125171 Query 20298 ACAAGGAGTAGATCAATTACAAAATGTTATTAATTTAATTAAAACGAACCCAAACGACAG 20357 | |||| | |||||||| |||| | | || ||| || |||| | | | Sbjct 125172 AAAAGGTATTGATCAATTGAAAAAGTGTGTCGATACCATTCGTCACAATCCAACCAATCG 125231 Query 20358 AAGAATTATTTTATGCGCCTGGAACGCTAAAGATGTGCCTTTAATGGCTTTGCCTCCATG 20417 ||||||||| | | || ||||| | | |||| | ||| |||||| | || || || Sbjct 125232 TAGAATTATTCTCTCTGCATGGAATGTTTCAGATTTACCTCAAATGGCACTTCCACCTTG 125291 Query 20418 TCATATGCTATGCCAATTTTACGTTGCTA---ATA---ATGAATTGTCGTGTCAAATGTA 20471 |||| | |||| ||||| | || | || ||| | |||||| ||||||||||| Sbjct 125292 TCATTTATTATGTCAATTCTGGGTGGATACAGATACACAAGAATTGAGTTGTCAAATGTA 125351 Query 20472 TCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATTGCAAGTTATGCGCTGCT 20531 |||| |||| ||||||||| | || || ||||| ||||||||| ||||| | | Sbjct 125352 TCAAAGATCATGTGATATGGGTTTAGGAGTACCTTTTAATATTGCATCCTATGCTTTATT 125411 Query 20532 TACGTATATGATTGCACATGTTACAGATTTAAAAACGGGTGACTTAGTCCACACCATAGG 20591 || | |||||| ||||| || | || ||| | ||||| || || || || Sbjct 125412 GACTTGTATGATGGCACAAGTATGTGGATTGAAACCAGGTGATTTTGTACATTGTTGTGG 125471 Query 20592 AGACGCGCATATTTACCTTAATCATATAGAACCTTTAAAATTACAGTTAACACGACAACC 20651 || ||| | || |||||||| ||||| || ||| |||| ||| || | || Sbjct 125472 TGATTGTCATGTCTATTCGAATCATATTGAACCATTGAAAGTACAATTAGAGAGAAATCC 125531 Query 20652 AAAACAATTCCCAACTCTTCGCATTACTCGAACTGTTAAAGATATTAACGATTTTAAAGC 20711 ||||| || |||| | | | | || || ||| || || || | ||||||||| Sbjct 125532 CAAACACTTTCCAAAATTGTACCTAAATCCAAATGTGAAGGAAATGGATGATTTTAAATT 125591 Query 20712 TGATGATTTTGTGTTAGAAGGTTATAATCCCCATAATTCAATTCCAATGGAAATGTCTGT 20771 ||| |||||||| || ||| |||| | || ||| | | || ||||||||| |||| Sbjct 125592 TGAAGATTTTGTATTGAAAGATTATGAACCTCATCCTACGATCAAGATGGAAATGGCTGT 125651 Query 20772 TTA 20774 || Sbjct 125652 GTA 125654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399181207458430