Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq82 105 5e-18 seq42 91.5 1e-13 seq76 89.7 4e-13 >seq82 Length=211372 Score = 105 bits (116), Expect = 5e-18 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 || ||||||||||| || |||||||||| || ||||| |||||||||||||| | Sbjct 147706 CCTCCTCTCAATCTCAAGACCAAGTGCAATGTAGATTCCTTTTGAATGTTGTAGTCAGAC 147765 Query 45170 A--GTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAG 45227 | ||| | | || |||| ||| |||||||| || ||||| | ||||| || |||| Sbjct 147766 AAGGTT--CTGCCATCTTCCAATTGCTTTCCGGCAAAGATCAATCTTTGTTGATCTGGAG 147823 Query 45228 GCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCA 45287 | | ||| |||||||| ||| ||| ||| || | | | | |||| || | Sbjct 147824 GAATACCTTCCTTGTCTTGAATCTTTGACTTGACATTCTCGATGGTGTCGTTGGATTCGA 147883 Query 45288 CCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||||| || || ||||| || |||| ||||| || || |||||||| Sbjct 147884 CCTCCAAAGTGATGGTCTTACCGGTCAAGGTCTTAACGAAAATTTGCAT 147932 >seq42 Length=292872 Score = 91.5 bits (100), Expect = 1e-13 Identities = 103/136 (76%), Gaps = 4/136 (3%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||||||||| || |||||||| || ||| ||||| || |||||||||||| | Sbjct 165710 CCACCTCTCAATCTCAAGACCAAGTGGAGAGTGGATTCCTTTTGGATGTTGTAGTCGGAC 165651 Query 45170 A--GTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAG 45227 | ||| | |||| |||| |||||| || || || ||||| || ||||| || || | Sbjct 165650 AAGGTT--CTTCCGTCTTCCAATTGTTTACCAGCAAAAATCAAACGTTGTTGATCAGGTG 165593 Query 45228 GCACACCCTCCTTGTC 45243 | | || |||||||| Sbjct 165592 GAATTCCTTCCTTGTC 165577 >seq76 Length=223365 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||||||||| || |||||||| || ||| ||||| |||||||||||||| | Sbjct 84288 CCACCTCTCAATCTCAAGACCAAGTGGAGAGTGGATTCCTTTTGAATGTTGTAGTCAGAC 84347 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 | | | | || |||| ||| || || || || ||||| | ||||| || ||||| Sbjct 84348 AATGTTCTGCCATCCTCCAATTGCTTACCAGCAAAAATCAATCTTTGTTGATCTGGAGGA 84407 Query 45230 ACACCCTCCTTGTC 45243 | ||| |||||||| Sbjct 84408 ATACCTTCCTTGTC 84421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395072436202054