Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq93 161 1e-34 >seq93 Length=103736 Score = 161 bits (178), Expect = 1e-34 Identities = 604/923 (65%), Gaps = 48/923 (5%) Strand=Plus/Plus Query 13856 TAAAAATCAACATCTAACGAAAAAACATTATCG-TCTTTGTTAGAAATAACGCCCATTT- 13913 ||||||||| |||| || ||| || || || |||||| | || |||| | ||| Sbjct 84516 TAAAAATCATCATCCAATCTAAAGACCTTCTCTCTCTTTGGT-GACATAATG----TTTG 84570 Query 13914 --TTTG-ATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATAT 13970 |||| |||||||| |||||| || ||||||||||| || ||||| || ||| || Sbjct 84571 CCTTTGCATATTCACCAACTCTCTTCTCAAAGAAGTTCGTCTTACCAGACACTGAAATCA 84630 Query 13971 TTTCCATAAAATCAAATGGATTTGTTGACA---TAAACACTTTATCACAACCTAGTTCTA 14027 | | ||| |||| ||||||||| | |||| ||| || |||||| | |||| | Sbjct 84631 TATTCATCCAATCGAATGGATTT-TGGACAAGGTAA--ACCTTATCATATCCTATCGAGA 84687 Query 14028 ATAGTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTA 14087 ||||||| ||| |||| || ||||| ||||| ||| | | | |||||||||| | Sbjct 84688 CAAGTAATCGATCAGCAACAAATTCAATGTATTGTTGCATGAGACGAGAATTCATACCAA 84747 Query 14088 TTAGTTTTACAGGAATTATATTGGTTAA-AAATTCTTTTTCTATAGACACAGCCTCGTTT 14146 | | | ||||| | | ||| || ||||| || || || ||||| || | Sbjct 84748 TCAAGTCCACAGGGA-GAGATTCTCGAATGAATTCCTTCTCAATCTCAACAGCTTCACTG 84806 Query 14147 A-TAATAATCGTAATAATTTCATTAG--AAGGAGG-ATATTTTAG-ATGTTTAAAAATTA 14201 | ||| | || | || | | || || || |||||| || ||| | | | | Sbjct 84807 ACCAATGAATGT-ACAACCTTTTGAGGCAATTTGGTATATTTGAGCATG-GAATACAAGA 84864 Query 14202 AACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTA 14261 ||| ||||| || || | || ||||||| | ||| | ||| || || || || | Sbjct 84865 GACAAGCAAAGTCCGTGTGTAATCCTTCATCTCGAGAAATCAATTCATTGGAGAAGGTCA 84924 Query 14262 ATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGA 14321 |||| |||||||| |||| || || | |||||| || | | ||| ||||| ||||| Sbjct 84925 ATCCAGGCATCAAACCTCTCTTCTTCATCCAAAAGATGGAACAGAAAGATCCACTAAAGA 84984 Query 14322 ATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCG 14381 | || || || || |||||| || || |||||||| ||||| | || | || Sbjct 84985 AGATACCTTCCACACAAGCAAAGGCAATCAATCGTTCAGCAAACAA------GTTATCCG 85038 Query 14382 A---TATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAG 14438 | |||||||| |||||| || || |||| || | | || ||||| | Sbjct 85039 AGTTGATCCATTTCAAAGCCCAACGAGCCTTCTTTTGAACGGATGGAACAGTATCAATGG 85098 Query 14439 CATTAAATAAATG--TTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCT 14496 |||| || | | | || |||||| || ||| |||||| || ||||| || || | Sbjct 85099 CATTGAAGAGACGATGTCTTTCTCTCGTGTCCTT--AATGTAGGTTTCAATTAG--AGTT 85154 Query 14497 --ATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCT 14554 |||||| || | || || || || || || || || || ||||| |||||||| ||| Sbjct 85155 GAATACATCTCTGCATGAATATTCTCAATGGCAATTTGGAATCCATAGAAACATCTGGCT 85214 Query 14555 TCTGACCATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCA 14614 || | ||| || || | |||| || ||| || ||||| || |||||||| Sbjct 85215 TCAGGAATTTGAACTTCAGCCATAAATTGTTGACACAAGTTCTCATTCACAATACCATCG 85274 Query 14615 CTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTG---CTGAGT 14671 || ||||| || ||||| | | || || |||| ||| ||||||| |||| Sbjct 85275 GAGGCAGCAAAGAAGGCCAAAACAGTCTTGATGAAGTGTTG---TTCATTGGTATTGAGA 85331 Query 14672 TTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCA 14731 ||| ||| | || | ||| | ||||| ||||| ||| | ||||| ||| || Sbjct 85332 GTTTCCCATTGAGCAATATCTGTGTGGAGATCCACTTCTTCAGCAGTCCAGAAAGATGCC 85391 Query 14732 ACAGCTTTTTTATACATTACCCA 14754 | || || || ||||| |||| Sbjct 85392 ATGGCCTTCTTGTACATCTCCCA 85414 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482342139170320