Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq82 118 8e-22 seq42 114 1e-20 seq120 107 1e-18 seq151 105 5e-18 seq29 105 5e-18 seq38 100 2e-16 seq26 96.9 3e-15 seq76 91.5 1e-13 >seq82 Length=211372 Score = 118 bits (130), Expect = 8e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| | | ||| | |||| ||| | ||| ||||| ||||||||||||||||| | | Sbjct 147706 CCTCCTCTCAATCTCAAGACCAAGTGCAATGTAGATTCCTTTTGAATGTTGTAGTCAGAC 147765 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| | | |||||||||||| || || ||| |||| | |||||||||||| || Sbjct 147766 AAGGTTCTGCCATCTTCCAATTGCTTTCCGGCAAAGATCAATCTTTGTTGATCTGGAGGA 147825 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | |||||||| || ||| | | |||||| | | | ||||| || ||| Sbjct 147826 ATACCTTCCTTGTCTTGAATCTTTGACTTGACATTCTCGATGGTGTCGTTGGATTCGACC 147885 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 || | |||||| | || |||||||| || || || |||||||||||| Sbjct 147886 TCCAAAGTGATGGTCTTACCGGTCAAGGTCTTAACGAAAATTTGCATT 147933 >seq42 Length=292872 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||||| | ||| | || | |||||| || || ||||||||||||||||| |||| Sbjct 166394 CCTCCCCTCAATCTCAAAACAAGGTGAAGAGTAGACTCTTTTTGAATGTTGTAATCGGAG 166335 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| | | |||||||||||| || || || | || | ||||||||| || || Sbjct 166334 AGGGTTCTTCCATCTTCCAATTGCTTACCAGCGAAAATCAATCTTTGTTGGTCTGGAGGA 166275 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | |||||||||||| || | | |||||| | | | || ||| || ||| | Sbjct 166274 ATGCCTTCCTTATCTTGGATCTTTGACTTGACATTCTCGATGGTATCATTGGATTCGACT 166215 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 || | || ||| | ||||| ||||| ||||| ||||| ||||||||| Sbjct 166214 TCCAATGTAATGGTCTTGCCAGTCAAAGTTTTAACAAAGATTTGCATT 166167 Score = 113 bits (124), Expect = 3e-20 Identities = 158/220 (72%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 18108 AGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTA 18167 ||||| | |||| ||| | |||||||||||||||||||||||| || | || ||| | Sbjct 165929 AGTCTCAAAACCAAGTGCAATGTTGATTCTTTTTGAATGTTGTAATCAGACAAGGTTCTT 165870 Query 18168 CAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCC 18227 | ||||| ||||| || || ||| |||| ||||||||||| || || | |||||| Sbjct 165869 CCGTCTTCTAATTGCTTTCCGGCAAAGATGAGTCTTTGTTGGTCTGGTGGAATTCCTTCC 165810 Query 18228 TTATC--GGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGG 18285 || || || |||| | || || | | ||| || ||| || ||| |||| | Sbjct 165809 TTGTCTTGGATCTTTGAT--TTAACGTTTTCAATGGTATCATTGGACTCAACCTCAAGAG 165752 Query 18286 TGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 | ||| | || |||||||| ||||| || || |||||||| Sbjct 165751 TAATGGTCTTTCCGGTCAAGGTTTTAACGAAGATTTGCAT 165712 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||| | | |||||| || | ||| | ||| ||||| ||||||||||||||||||| Sbjct 166167 TCCTCCTCTCAATCTAAGAACAAGGTGCAATGTGGATTCCTTTTGAATGTTGTAGTCGGA 166108 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | ||| | | |||||||||||||| || ||| | || | | ||||||||| || Sbjct 166107 GAGAGTTCTTCCGTCTTCCAATTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGTGG 166048 Query 18218 CACGCCTTCCTTATC 18232 | ||||||||||| Sbjct 166047 AATACCTTCCTTATC 166033 >seq120 Length=320511 Score = 107 bits (118), Expect = 1e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||| || ||||| | || | ||||| || || |||||||| | |||||| || | Sbjct 60588 TCCTCCACGAAGTCTCAACACAAGGTGAATGGTCGAATCTTTTTGCAAGTTGTAATCAGA 60647 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 |||||| | | ||| |||||||||||||| || || || | | ||||||||| | || Sbjct 60648 GATTGTTCTTCCATCCTCCAATTGTTTGCCAGCGTAAATTAAACGTTGTTGATCGGCTGG 60707 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | || || ||||| ||||||| ||| || | ||| | ||| || ||| Sbjct 60708 AATTCCCTCTTTATCAGCAATTTTGCTCTTCACATTCTCAATCGAGTCGTTGGACTCTAC 60767 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 ||| | ||||| |||| || || || ||||| ||||| | ||||||| Sbjct 60768 TTCCAATGTGATAGTTTTTCCAGTTAAGGTTTTCACAAACAATTGCATT 60816 Score = 87.8 bits (96), Expect = 1e-12 Identities = 151/218 (69%), Gaps = 1/218 (0%) Strand=Plus/Plus Query 18112 TAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAAT 18171 |||| |||| ||||| || | || ||||||| ||||||||| | | |||| | | || Sbjct 60831 TAAG-ACCAAATGAAGGGTAGCATCCTTTTGAACGTTGTAGTCAGAGAGTGTTCTTCCAT 60889 Query 18172 CTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTAT 18231 | |||||||| ||||| |||||||| | | |||||||| | || | |||||||||| Sbjct 60890 CCTCCAATTGCTTGCCTGCATAGATCAAACGCTGTTGATCAGCTGGAATTCCTTCCTTAT 60949 Query 18232 CGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGC 18291 | | |||| ||| || | ||| | |||| | ||| || | ||||| Sbjct 60950 CTGTGATTTTGCTCTTCACATTCTCAATCGAGTCATTAGACTCAACCTCCAATGTGATAG 61009 Query 18292 TTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTT 18329 || | || || | |||||| ||||| | |||||| ||| Sbjct 61010 TTCTACCAGTGAGTGTTTTGACAAATAGTTGCATGTTT 61047 >seq151 Length=76492 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||| || ||||| | || | || | ||||| |||||||| | | | ||||| | Sbjct 51264 TCCTCCTCGCAGTCTCAAAACAAGATGGATAGTTGAATCTTTTTGCAAGCTATAGTCAGA 51205 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | |||| | | ||| ||||||||||| || || || || | | |||||||||| | || Sbjct 51204 AACTGTTCTTCCATCCTCCAATTGTTTTCCAGCGTAAATTAAACGTTGTTGATCCGCTGG 51145 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||||||||| ||| | | ||| || | ||| | |||| || ||| | Sbjct 51144 AATACCTTCCTTATCACAAATCTTTCTCTTCACGTTCTCAATCGAGTCATTGGACTCTGC 51085 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||||| |||||| | || || ||||| || || || || | |||||| Sbjct 51084 TTCAATCGTGATGGTCTTTCCTGTCAAAGTCTTGACGAATAATTGCAT 51037 >seq29 Length=427163 Score = 105 bits (116), Expect = 5e-18 Identities = 158/222 (71%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 18108 AGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTA 18167 ||||| || || | ||| || || ||||| ||||||||||||||||||| || ||| | Sbjct 48772 AGTCTGAGGACAAGGTGGAGAGTGGATTCCTTTTGAATGTTGTAGTCGGACAAGGTTCTT 48713 Query 18168 CAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCC 18227 | |||||| ||||| || || ||| |||| |||||||||||||| || | |||||| Sbjct 48712 CCATCTTCTAATTGCTTTCCGGCAAAGATGAGTCTTTGTTGATCAGGTGGAATTCCTTCC 48653 Query 18228 TTATC-GGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGT 18286 || || | | ||| | || || | | | ||||| || ||| ||||| || Sbjct 48652 TTGTCTTGGATCTTGCT-TTTCACGTTCTCGATTGTGTCGTTGGATTCGACTTCAAGAGT 48594 Query 18287 GATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328 ||| | ||||| || || || || || || |||||||| || Sbjct 48593 GATAGTCTTGCCAGTTAAAGTCTTGACGAAGATTTGCATGTT 48552 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/233 (70%), Gaps = 1/233 (0%) Strand=Plus/Minus Query 18094 GTTATCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGT 18153 |||| || || | || ||| || || | |||||| |||||||| ||||| |||||||| | Sbjct 49279 GTTA-CCACCTCTTAATCTCAGAACAAGGTGAAGAGTTGATTCCTTTTGGATGTTGTAAT 49221 Query 18154 CGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCA 18213 ||| | ||| | | |||||||||||| || || || | || | | ||||||||| Sbjct 49220 CGGAAAGGGTTCTGCCATCTTCCAATTGCTTACCAGCGAAAATCAAACGTTGTTGATCTG 49161 Query 18214 CGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCT 18273 || | || |||||||| ||| | | |||||| | | | ||||| | | Sbjct 49160 GTGGAATCCCCTCCTTATCTTGAATCTTTGACTTGACGTTCTCGATTGTGTCGTTAGATT 49101 Query 18274 CGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 | ||| | |||||| | || || ||||| ||||| || |||||||||||| Sbjct 49100 CAACTTCCAAAGTGATGGTCTTTCCTGTCAAAGTTTTCACGAAAATTTGCATT 49048 >seq38 Length=237352 Score = 100 bits (110), Expect = 2e-16 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 18108 AGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTA 18167 ||||| | |||| ||| || || || || |||||||||||||||||| || ||| | Sbjct 109074 AGTCTCAAAACCAAGTGTAGAGTGGAATCCTTTTGAATGTTGTAGTCGCTCAAAGTTCTT 109133 Query 18168 CAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCC 18227 | ||| |||||||| || || ||| |||||| ||||||||||||| || | || ||| Sbjct 109134 CCATCCTCCAATTGCTTACCAGCAAAGATAATTCTTTGTTGATCCGAAGGAATACCATCC 109193 Query 18228 TTATCGGCAATTTGTTGCTTGAC-CTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGT 18286 || || ||| | ||| || || | ||| ||||||| ||| | || | || Sbjct 109194 TTTTCAAAAATCTTACTCTTTACACTCT-CAATAGTGTCATTCATCTCTGCCTCCAAAGT 109252 Query 18287 GATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| |||| || || || ||| | ||||| | |||||| Sbjct 109253 GATTGTTTTTCCAGTTAAAGTTCTCACAAAGAGTTGCAT 109291 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || |||| ||| | |||| |||||| || | || ||||| | ||||| || | Sbjct 109293 CCACCACGTAATCTCAACACCAAGTGAAGAGTAGCATCCTTTTGTACATTGTAATCCGAT 109352 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| | | ||| || |||||||| || ||||| || | | ||||||||| | || Sbjct 109353 AAAGTTCTTCCATCCTCTAATTGTTTTCCAGCATAAATCAAACGTTGTTGATCAGCTGGA 109412 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | |||||||||||| | |||| || || || | ||| | |||| || ||| Sbjct 109413 ATGCCTTCCTTATCTGTGATTTTCTGTTTAACATTCTCAATCGAGTCATTGGACTCAACA 109472 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328 || | ||||| || | || || | |||||| || || | ||||||||| Sbjct 109473 TCCAATGTGATTGTTCTACCTGTAAGTGTTTTAACGAATAATTGCATTTT 109522 >seq26 Length=133099 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||||| | ||| | |||| || | || || || || |||| | |||| || | | Sbjct 73288 CCTCCCCTCAATCTCAACACCAAATGCAAGGTAGAATCCTTCTGAACGCTGTAATCAGAC 73229 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| | | ||| || |||||||| || || | || | || ||||||||| | || Sbjct 73228 AAGGTTCTTCCATCCTCTAATTGTTTTCCTGCGAAAATCAATCGTTGTTGATCGGCTGGA 73169 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | |||||||||||||| |||| |||||| | | | | |||| || ||| | Sbjct 73168 ATCCCTTCCTTATCGGCTATTTTGCTCTTGACGTTCTCGATCGAGTCATTGGACTCTACT 73109 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTTAA 18331 || | ||| ||| | || || ||||| ||||| ||||| |||||||| || || Sbjct 73108 TCCAAGGTAATGGTCTTACCAGTCAAGGTTTTCACAAAGATTTGCATGTTGAA 73056 >seq76 Length=223365 Score = 91.5 bits (100), Expect = 1e-13 Identities = 109/147 (74%), Gaps = 1/147 (1%) Strand=Plus/Plus Query 18086 TTCTTTTTGTTATCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAAT 18145 ||||| || ||| || || | | ||| | |||| ||| || || ||||| |||||||| Sbjct 84276 TTCTTCTTCTTA-CCACCTCTCAATCTCAAGACCAAGTGGAGAGTGGATTCCTTTTGAAT 84334 Query 18146 GTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTG 18205 ||||||||| | || |||| | | ||| |||||||| || || ||| | || | |||||| Sbjct 84335 GTTGTAGTCAGACAATGTTCTGCCATCCTCCAATTGCTTACCAGCAAAAATCAATCTTTG 84394 Query 18206 TTGATCCACGGGCACGCCTTCCTTATC 18232 |||||| || | |||||||| || Sbjct 84395 TTGATCTGGAGGAATACCTTCCTTGTC 84421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379341346251630