Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq93 136 4e-27 seq29 105 6e-18 seq36 104 2e-17 seq42 98.7 9e-16 >seq93 Length=103736 Score = 136 bits (150), Expect = 4e-27 Identities = 585/911 (64%), Gaps = 43/911 (5%) Strand=Plus/Minus Query 57525 GAGAATCCCCGTAGATTTGTCATGTTTCCGATTGAATATCCAGACATTTGGAACATGTAC 57584 || ||||| | | | || || | || || || ||| ||| | | ||||| | |||||| Sbjct 85462 GAAAATCCACATCGTTTCGTTCTCTTCCCAATCGAACATCAAAAGGTTTGGGAGATGTAC 85403 Query 57585 AAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGC 57644 || ||||| ||||| || ||||| | |||||||| || || | ||| | Sbjct 85402 AAGAAGGCCATGGCATCTTTCTGGACTGCTGAAGAAGTGGATCTCCACACAGATATTGCT 85343 Query 57645 GATTGGGATTCCCTCAAAGAATCTGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTC 57704 | ||||| | ||||| ||| | | || || || || ||||| || || Sbjct 85342 CAATGGGAAACTCTCAATACCAATGAACAACACTTCATCAAGACTGTTTTGGCCTTCTTT 85283 Query 57705 GCCGCATCCGATGGTATTGTTAACGAGAATTTG-GTCGAAAGATTTTCACAAGAAGTGCA 57763 || || |||||||||||||| || ||||| ||| ||| || |||| ||||| || Sbjct 85282 GCTGCCTCCGATGGTATTGTGAATGAGAACTTGTGTC-AACAATTTATGGCTGAAGTTCA 85224 Query 57764 AGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGA 57823 | | | || || ||||| || || ||||| ||| | |||||||| || | ||| |||| Sbjct 85223 AATTCCTGAAGCCAGATGTTTCTATGGATTCCAAATTGCCATTGAGAATATTCATGCAGA 85164 Query 57824 AATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACGACGAGAA--ACGTAGACTG 57881 |||||||| || || || || ||| | |||||| |||| ||||| || | | || Sbjct 85163 GATGTATTCAACTCTAATTGAAACCTACATTAAGGAC-ACGA-GAGAAAGACATCGTCTC 85106 Query 57882 TTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGG 57941 ||||| || || || || | || | | |||||||| ||| | | |||||| Sbjct 85105 TTCAATGCCATTGATACTGTTCCATCCGTTCAAAAGAAGGCTCGTTGGGCTTTGAAATGG 85046 Query 57942 ATAAAAAGCGCCACGG---CCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAA 57998 || || | ||| | ||| || || | | || || || || || ||| Sbjct 85045 ATCAA------CTCGGATAACTTGTTTGCTGAACGATTGATTGCCTTTGCTTGTGTGGAA 84992 Query 57999 GGTATATTCTTTTCGGGCAGCTTTGCG-GCAATATTTTGGATGAAGAAACGCGGCCTGAT 58057 ||||| ||| ||| | | | |||| | | || |||||||||||||| | || |||| Sbjct 84991 GGTATCTTC-TTTAGTGGATCTTTCTGTTCCATCTTTTGGATGAAGAAGAGAGGTTTGAT 84933 Query 58058 GCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTT 58117 ||| || |||| || ||| || ||||| || || || || || | || || || || Sbjct 84932 GCCTGGATTGACCTTCTCCAATGAATTGATTTCTCGAGATGAAGGATTACACACGGACTT 84873 Query 58118 TGCGTGCCTAATGTACTCTCACATTGTC-AATAAACCGACGCGGGATCGCATC------T 58170 ||| || || |||| || ||| || |||| ||| | || || || | Sbjct 84872 TGCTTGTCTCTTGTATTC---CATGCTCAAATATACCAA------ATTGCCTCAAAAGGT 84822 Query 58171 TGGACATT-----ATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAGCCCT 58225 || ||||| ||| || || || | ||| || || || || | ||| | || Sbjct 84821 TGTACATTCATTGGTCAGTGAAGCTGTTGAGATTGAGAAGGAATTCATTCGAGAATCTCT 84762 Query 58226 ACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAGTTTGTTGC 58285 || |||| | || | |||||||| | | | ||| | | |||||||| |||||||| Sbjct 84761 CCCTGTGGACTTGATTGGTATGAATTCTCGTCTCATGCAACAATACATTGAATTTGTTGC 84702 Query 58286 CGACAGACT--TTTGCTCGAACTGATTGGAGAGCGTCATTACAACACGAAAAATCCGTTT 58343 || || | || ||||| ||| || | || |||| ||||||| || Sbjct 84701 TGATCGATTACTTGTCTCGATAGGATATGATAAGGT--TTACCTTGTCCAAAATCCATTC 84644 Query 58344 GATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGaaaaaaaaGTTAGC 58403 |||| |||||| |||| || | || ||||| ||||| || || || | |||| | Sbjct 84643 GATTGGATGAATATGATTTCAGTGTCTGGTAAGACGAACTTCTTTGAGAAGAGAGTTGGT 84584 Query 58404 GAATAT-CAAA 58413 |||||| |||| Sbjct 84583 GAATATGCAAA 84573 >seq29 Length=427163 Score = 105 bits (116), Expect = 6e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| || ||| ||||||| || || ||||| | || |||||| | | Sbjct 49049 ATGCAAATTTTCGTGAAAACTTTGACAGGAAAGACCATCACTTTGGAAGTTGAATCTAAC 49108 Query 31253 GACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | ||||| || || || || ||||| || | || || || || Sbjct 49109 GACACAATCGAGAACGTCAAGTCAAAG-ATTCAAGATAAGGAGGGGATTCCACCAGATCA 49167 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 || ||| | || |||||||| || || |||||||| | || | |||||| || Sbjct 49168 ACAACGTTTGATTTTCGCTGGTAAGCAATTGGAAGATGGCAGAACCCTTTCCGATTACAA 49227 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||| ||||| ||||| |||||||| || || || ||| | || || |||| Sbjct 49228 CATCCAAAAGGAATCAACTCTTCACCTTGTTCTGAGATTAAGAGGTGGTA 49277 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 ||||||||||| ||||| |||||| | || ||||| || ||||| | || || ||| | Sbjct 48552 AACATGCAAATCTTCGTCAAGACTTTAACTGGCAAGACTATCACTCTTGAAGTCGAATCC 48611 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 ||||| |||| | || ||| | || ||||||||||| | || || || Sbjct 48612 AACGACACAATCGAGAACGTGAAAAGCAAGATCCAAGACAAGGAAGGAATTCCACCTGAT 48671 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 || || | || || || || || || || || ||||| | || || ||| || Sbjct 48672 CAACAAAGACTCATCTTTGCCGGAAAGCAATTAGAAGATGGAAGAACCTTGTCCGACTAC 48731 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||||||||| ||||| ||||| || || || || ||||| || || |||| Sbjct 48732 AACATTCAAAAGGAATCCACTCTCCACCTTGTCCTCAGACTCAGAGGTGGTA 48783 >seq36 Length=122865 Score = 104 bits (114), Expect = 2e-17 Identities = 132/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 23384 AACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCC 23443 |||| || || || || | ||||| || || || |||||| ||||||| ||||| || Sbjct 115800 AACAAATCTCGAGCTCGAATTTCCTCCTTTCCAGTATTCTTTCTCAAATCTAAAAAATCA 115859 Query 23444 AACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCG 23503 || | || | |||||| ||||| | ||||||||||| || || || ||| || Sbjct 115860 AAAATATCGGAATGCCAAGGCTCCAAATAAACGGCAAAGGCTCCTTTTCGTTTACCACCA 115919 Query 23504 CCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTG 23563 || ||||| ||||||||||| |||| |||| | || | ||||| || | ||| || ||| Sbjct 115920 CCTTGATCCACGTAACGGGCAGTGTCGTTGAATACACGAAGCATGGGAATGAGTCCATTG 115979 Query 23564 GA 23565 || Sbjct 115980 GA 115981 >seq42 Length=292872 Score = 98.7 bits (108), Expect = 9e-16 Identities = 161/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || |||||||| ||||| ||||| || || || || || ||||| |||| || ||| | Sbjct 165481 AAGATGCAAATCTTCGTCAAGACCCTCACTGGTAAGACTATCACTCTCGAAGTCGAATCC 165540 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 ||||| | || | || ||| | || ||||||||||| | || || || Sbjct 165541 AACGACACGATTGAGAACGTGAAAAGCAAGATCCAAGACAAGGAAGGAATTCCACCTGAT 165600 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 || || ||| | || || ||||| ||||| ||||||||| | || || ||| || Sbjct 165601 CAACAACGTTTGATTTTTGCTGGTAAACAATTGGAAGACGGAAGAACCTTGTCCGACTAC 165660 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| ||||| ||||| ||||| || |||| | ||| |||| || |||| Sbjct 165661 AACATCCAAAAGGAATCCACTCTCCACTTGGTCTTGAGATTGAGAGGTGGTA 165712 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| ||||| || || || || || || || | || |||||| | | Sbjct 165940 ATGCAAATCTTCGTCAAGACCCTCACTGGTAAGACAATTACTTTGGAAGTTGAATCCAAC 165999 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||||| || || | || || |||||||| | || || || || Sbjct 166000 GACACCATCGAAAACGTGAAGAGCAAGATTCAAGATAAGGAAGGTATTCCACCAGATCAA 166059 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || ||| | || || ||||| ||||| ||||||||| | ||| | ||| || ||| Sbjct 166060 CAACGTTTGATTTTTGCTGGTAAACAATTGGAAGACGGAAGAACTCTCTCCGACTACAAC 166119 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 |||||||| ||||| || | || || || |||||| |||| || || Sbjct 166120 ATTCAAAAGGAATCCACATTGCACCTTGTTCTTAGATTGAGAGGAGG 166166 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || || ||| |||| ||||| || || || | || || ||| | Sbjct 166168 ATGCAAATCTTTGTTAAAACTTTGACTGGCAAGACCATTACATTGGAAGTCGAATCCAAT 166227 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | |||| | ||||| || ||| | || ||||||||| | || || ||||| Sbjct 166228 GATACCATCGAGAATGTCAAGTCAAAGA-TCCAAGATAAGGAAGGCATTCCTCCAGACCA 166286 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 || | | || |||||||| || || |||||||| | || | |||||| || Sbjct 166287 ACAAAGATTGATTTTCGCTGGTAAGCAATTGGAAGATGGAAGAACCCTCTCCGATTACAA 166346 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 |||||||||||| || |||||||| || || | ||| ||||||| ||| Sbjct 166347 CATTCAAAAAGAGTCTACTCTTCACCTTGTTTTGAGATTGAGGGGAGGT 166395 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445763201626080