Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq36 219 5e-52 seq93 206 3e-48 >seq36 Length=122865 Score = 219 bits (242), Expect = 5e-52 Identities = 823/1276 (64%), Gaps = 26/1276 (2%) Strand=Plus/Plus Query 62621 TCCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGC 62680 |||| ||| || ||||| |||||||| ||| || | || |||||| || ||||| Sbjct 115109 TCCTTGATAGGTCTCATAAGGTCCTTCTGTCTTGGCAACTTCACAACTGGCTGTCAATGC 115168 Query 62681 ACCGTAATAAATGGTTTCAAAGATCTTCTTATTT--AGATCTTGTGCTTCCGGGCTATCA 62738 | | |||| || ||||| || || |||| || | |||||| ||||| || || Sbjct 115169 AGCAAAATATATTGTTTCGAAAAT-TTCTCGATTCAAAATCTTG-GCTTCTTCACTCTCG 115226 Query 62739 AATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGT 62798 || ||| || | ||||| || || || ||||| |||||||| | ||| || || Sbjct 115227 AAGGGAAGATGCATCTTGATAAAGGCATCGGCCAATCCCTGAACACCCAAACCAATGGGA 115286 Query 62799 CTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATT 62858 | ||||||| ||||| || |||||| || ||||||||||| | || || || Sbjct 115287 CGATGTCTCATATTACTCTTTCTAGCTTCCTCAACTGGATAATAATTCTTGTCAATGATC 115346 Query 62859 TTATTGAGATTTCTGA---CAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAAT 62915 || || | ||| || ||||| ||||| | || || || | ||| | Sbjct 115347 TTGTTCAAATTCTTGGTGGCAATT---TTGACAATTTCAAACAATTGTTCATGATCGTAG 115403 Query 62916 CGCC----CATCT-ATT-ACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCT 62969 | | ||| ||| ||| || | | ||||| | ||||| |||||||| ||| Sbjct 115404 GTACGTGTCGTCTCATTGACATACTTTGGAAGTGCAATACTTGCCAAGTTACACACAGCT 115463 Query 62970 ACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTT 63029 || |||| | | | | |||| || || ||||| || | || | ||||| ||| Sbjct 115464 ACTTCATCTGGAGCTGTGTATTCAATAATTTCAGTACACAAGTTGGAGGATTTGATCGTT 115523 Query 63030 CCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTA 63089 || | |||||||||||| ||| | ||||| |||||||||||||| ||| | ||| | Sbjct 115524 CCAAGATTTTGTTGATTTGATTTTCTATTACATGCATCCTTATAAAGCATGTAAGGAACA 115583 Query 63090 CCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATA-GA 63148 ||||| ||||| || | || ||||| || ||| | || |||| | | | | Sbjct 115584 CCAGTCTCAATTTGTGCCTCAATAATTGCAAACCAAAGCTCTTGAGCACGAACGACACGG 115643 Query 63149 TTTGTATCTCCTTTCTCTTTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAAC 63208 || | || | || | || || | ||||||| | ||||| || ||||| || Sbjct 115644 CGTGCACGACCCTCCT-TCTCATAACGCAAATACAATTCATTAAACTCTTCACCCCACAC 115702 Query 63209 ATTGTCCAATCTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCAC 63268 || | | || |||| ||||| ||||| | | ||||| | || |||||||| Sbjct 115703 ATCAGCAAGTCCAGGAGCTTCATTAGGACAAAAGAGTGACCAATGAGAATCCTCCTTCAC 115762 Query 63269 TCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTC 63328 || | |||||| | |||| | ||| | | | | ||| | ||||| | || | ||| Sbjct 115763 TCTCTCCATAAACAAATCATTCACCCACAAACCCAAAAACAAATCTCGAGCTCGAATTTC 115822 Query 63329 CTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTC 63388 ||| ||||| ||||||||| | | ||| | || | | |||||| |||||||| || || Sbjct 115823 CTCCTTTCCAGTATTCTTTCTCAAATCTAAAAAATCAAAAATATCGGAATGCCAAGGCTC 115882 Query 63389 CAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGT 63448 ||| || | ||| | |||| ||||| || || ||||| | ||| | || || Sbjct 115883 CAAATAAACGGCAAAGGCTCCTTTTCGTTTACCACCACCTTGATCCACGTAACGGGCAGT 115942 Query 63449 GTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGAT 63508 || || | || | | ||| ||||| | || || || | || ||||| || || Sbjct 115943 GTCGTTGAATACACGAAGCATGGGAATGAGTCCATTGGAGGTTCCGTTGGTTCCTCGAAT 116002 Query 63509 ATAGCCTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGA 63568 ||| |||| ||||||||| ||| || || | || || || || || | || || Sbjct 116003 GTAGGATCCAGAGGCACGAATGTTATGAACGGACAAGCCGATACCACCAGCACTCTTGGA 116062 Query 63569 GATTAATGCGCATCGT-TTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGT 63627 || || || || ||| || | || || || || ||| ||| ||| || ||||| Sbjct 116063 TATCAAGGCACA-CGTCTTGAGTGTATCGTAAATACCTGAAATGGAATCGTCTTTCATGG 116121 Query 63628 TAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAG 63687 | || || || | |||||| || | ||| || ||||| || | ||||||| Sbjct 116122 CCACTAAGAAGCAAGAACTCATTTGAGGAGTGGGAGTACCAGCATTGAAGAGAGTAGGAG 116181 Query 63688 AAGCGTGCGTAAACCATTTTTCAG---AAAGTAGATTGTACGTCTCAATAGCTGAGTCTA 63744 | ||||| | ||| | ||| ||||| | ||| || |||||||| || | Sbjct 116182 AGGCGTGGATGAAC---ATACCAGTGCTAAGTAATTCGTAGGTTTCAATAGCCTTCTCAA 116238 Query 63745 TATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAA 63804 |||| | |||||| || | |||||||| |||||||| ||||||| ||| ||| Sbjct 116239 TATCGGAACCATGAATGCCCAAACTCACACGCATGAACATGTGTTGAGGTCGTTCGGCAA 116298 Query 63805 TTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGT 63864 | | | ||| | ||||||| | |||| | ||| ||||| ||||| || | | Sbjct 116299 TAACATCTCCGAGTTTGAGCAAGTAGCTTCTTTCAAGAGTCTTAAAGCCAAAGTAATCGA 116358 Query 63865 ATGAAAAGTCTCGTTC 63880 || | | |||||||| Sbjct 116359 ATTGATAATCTCGTTC 116374 >seq93 Length=103736 Score = 206 bits (228), Expect = 3e-48 Identities = 394/575 (69%), Gaps = 4/575 (1%) Strand=Plus/Plus Query 33603 CCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTT 33662 || || |||| | ||| ||||| || || || || | ||| ||||| | || | ||| Sbjct 84888 CCTTCATCTCGAGAAATCAATTCATTGGAGAAGGTCAATCCAGGCATCAAACCTCTCTTC 84947 Query 33663 TTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAG 33722 || | |||||| |||||| ||| ||||| ||||||||| ||||| || ||||||| Sbjct 84948 TTCATCCAAAAGATGGAACAGAAAGATCCACTAAAGAAGATACCTTCCACACAAGCAAAG 85007 Query 33723 GCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGT-ATCCACTTTTGAGCCCAATCGGC 33781 ||||| | || || || ||| | | | | ||||| || ||||||| || Sbjct 85008 GCAATCAATCGTTCAGCA-AACAAGTTATCCGAGTTGATCCATTTCAAAGCCCAACGAGC 85066 Query 33782 CTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACT 33841 |||||||| || | || | || || |||||||| |||||| | | |||| | | Sbjct 85067 CTTCTTTTGAACGGATGGAACAGTATCAATGGCATTGAAGAGACGATGTCTTTCTCTCGT 85126 Query 33842 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33901 || |||| || || || || | | |||||| || | |||||| || |||||||| Sbjct 85127 GTCCTTAATGTAGGTTTCAATTAGAGTTGAATACATCTCTGCATGAATATTCTCAATGGC 85186 Query 33902 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTC 33961 || || ||||| ||||||||||| || || | ||| || ||||| | |||| ||| Sbjct 85187 AATTTGGAATCCATAGAAACATCTGGCTTCAGGAATTTGAACTTCAGCCATAAATTGTTG 85246 Query 33962 TGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTAT 34021 || || |||||||| || ||||| ||| ||||| || ||||| ||| || || Sbjct 85247 ACACAAGTTCTCATTCACAATACCATCGGAGGCAGCAAAGAAGGCCAAAACAGTCTTGAT 85306 Query 34022 AAAATATTTTTCGTCTGGTGTT-AGTTTATTCCAATCATTGATATCTTTAGATATATCCA 34080 || | || ||| | |||| || || | | ||| | | |||||| | | ||||| Sbjct 85307 GAAGTGTTGTTCAT-TGGTATTGAGAGTTTCCCATTGAGCAATATCTGTGTGGAGATCCA 85365 Query 34081 CTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGAT 34140 ||||||| | ||||| || |||||| ||||| || ||||| | ||| | | |||| Sbjct 85366 CTTCTTCAGCAGTCCAGAAAGATGCCATGGCCTTCTTGTACATCTCCCAAACCTTTTGAT 85425 Query 34141 ATTGGATTGGGAAAATAACAAATCTATTTGGATTT 34175 || ||||||||| | ||| || | || ||||||| Sbjct 85426 GTTCGATTGGGAAGAGAACGAAACGATGTGGATTT 85460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629813081058720