Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq36 190 2e-43 seq93 147 2e-30 >seq36 Length=122865 Score = 190 bits (210), Expect = 2e-43 Identities = 1080/1710 (63%), Gaps = 60/1710 (4%) Strand=Plus/Plus Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849 || || ||||||| || | || | || | || |||||||| ||||||||||||||| Sbjct 114498 TCGACAGTGAATTGAATGGCATCGGCAGCTGGTTGTGTTCTCAAATAATACATTCCAGTC 114557 Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTA-GGATT 36908 || | ||| ||||| | ||||| ||||| | || ||| | | ||| | ||| | Sbjct 114558 TTCAATCCCTTACTCCAAGCATAAAAGTGCATGGAAGACATTTTGGAG-ATGGATGGAGT 114616 Query 36909 ATCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCAT 36968 | ||| | | | | ||||||| |||||| || || | | |||| || || | Sbjct 114617 GGCAATAAAGACATTGAGTGATTGAGATTGATCAATGAATGGAGCTCTCTCAATGGCAAG 114676 Query 36969 TTCTAAAATACATTTTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATC 37028 || || | || ||||| || |||||||| || || || | || || |||| ||| Sbjct 114677 ATCCAACAAACTCTTTTGTTTGATTTCCCAAACAGTCTTGTACAATTCCTTAATATCATC 114736 Query 37029 TGGTAAATCTA--AATGTT--GAATAGAACCATTATGTAACACAATTGTATTCTTTATGT 37084 ||| || || | |||||| |||||||||| | | | |||| |||| || | Sbjct 114737 TGG-AATTCCAGCAATGTTTTGAATAGAACCTCTGTTGGCAATAATTTGATTCACAATAT 114795 Query 37085 CATTATTCCACATATTTCTACTTATTAGTTCTCTCAATAGGTGTGGATTTACAACCTGAA 37144 ||||||||| || || | || | || ||| || | || || Sbjct 114796 TTGAATTCCACATTCCCAAACGAATCAAGTCAGATACTAAATGTCTGTTAATGACTGGAT 114855 Query 37145 AATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACTCAT 37204 | || ||| || || | ||| ||||| | ||| ||| ||||| |||| | |||| Sbjct 114856 ATTCACCACTCAAGACACGTCTCGTATACACATTCGAAGTGTATGGCTCAAAACATTCAT 114915 Query 37205 TATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTTC 37264 |||||| || |||||| || |||||||| |||||||| || | || | ||||| | Sbjct 114916 TATTACCCAAAATTTGACTGGTGGATGCAGTTGGCATTGGAGCAACAAGTAAACTATTAC 114975 Query 37265 TCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCC-AATCCCATA----AATC-TG 37318 | ||||| | | |||| |||| | | | |||| |||||||| | || || Sbjct 114976 GAACTCCATATTTGAGAATT-TCTTGTCTCAAACCTTCCCAATCCCATCTTCCACTCGTG 115034 Query 37319 TTG---------------GGTTC---TTTAA----CCACATATCATATTGTAGAATACCT 37356 || ||||| ||| | ||| | |||| ||| | ||| ||| Sbjct 115035 ATGATCTTTCCTTCAAAAGGTTCACCTTTCATGGTCCAAAATTCATGTTGGAAAATTCCT 115094 Query 37357 TTACTCGCTGGAGAATCGTTATATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAA 37416 ||||| |||| | | ||| |||||||||||||| | | || || | ||| ||| Sbjct 115095 CTACTCATTGGACTTCCTTGATAGGTCTCATAAGGTCCTTCTGTCTTGGCAACTTCACAA 115154 Query 37417 CTAGATTCTAGTGCGGCATAATATATTGTTTCGAAAATTTGTATATTTAATATTTTTGCT 37476 || | | | ||| ||| ||||||||||||||||||||| | ||| || || || ||| Sbjct 115155 CTGGCTGTCAATGCAGCAAAATATATTGTTTCGAAAATTTCTCGATTCAAAATCTTGGCT 115214 Query 37477 TCTTCGCTATCGAATGCATAGCCCAATAAT-ATAAACACATCAGCCAAACCCTGAACACC 37535 ||||| || ||||| | | || || | ||||| |||| ||||| ||||||||||| Sbjct 115215 TCTTCACTCTCGAAGGGA-AGATGCATCTTGATAAAGGCATCGGCCAATCCCTGAACACC 115273 Query 37536 GATACCTATGGGTCTATGTTTCTTATTA---GATCTAGACGATTCTATCACTGGATAATA 37592 | ||| ||||| | |||| || ||||| |||| | ||| ||||||||||| Sbjct 115274 CAAACCAATGGGACGATGTCTCATATTACTCTTTCTA---GCTTCCTCAACTGGATAATA 115330 Query 37593 ATTGATATCTATTATTTTATTTAGATTTTTAACTAGTATTTTCGTAATTATTCTCAACTT 37652 ||| | || || || || || | ||| || ||||| |||| ||| | Sbjct 115331 ATTCTTGTCAATGATCTTGTTCAAATTCTTGGTGGCAATTTTGACAATTTCAAACAATTG 115390 Query 37653 GTC--GAACATAAATACGT----TATTATTAACAAATTTACTCAACGAAATAGATCCTAG 37706 || || | || ||||| | | ||| ||| | || | | |||| | | | Sbjct 115391 TTCATGATCGTAGGTACGTGTCGTCTCATTGACATACTTTGGAAGTGCAATACTTGCCAA 115450 Query 37707 ATTACATACAGCAACTTCATCTTCGTTACTAAATTGTATAATCTCTGTACAGAGATTACT 37766 ||||| ||||| ||||||||| | ||| ||||| || ||||| | || Sbjct 115451 GTTACACACAGCTACTTCATCTGGAGCTGTGTATTCAATAATTTCAGTACACAAGTTGGA 115510 Query 37767 CGATCTAATTGTTCCCAAATTGCTTTGATTGGATTTTTTATTACAAGAATCTTTATATAG 37826 ||| | || ||||| | ||| |||||| |||||| ||||||| | ||| ||||| || Sbjct 115511 GGATTTGATCGTTCCAAGATTTTGTTGATTTGATTTTCTATTACATGCATCCTTATAAAG 115570 Query 37827 TATATACGGCGTTCCTTGTTCTATTTGAGCCTCGATAATAGATTTCCATAAACTTCTT-- 37884 || || || || || ||||| ||||| ||||| | || ||| |||| Sbjct 115571 CATGTAAGGAACACCAGTCTCAATTTGTGCCTCAATAATTGCAAACC--AAAGCTCTTGA 115628 Query 37885 GCTTTAACG--ATCGCTTTAAtttttttCTTTGTTTCGTATTCTATATATAATTTGTTAA 37942 || |||| | || | | || | | || || | ||| |||| |||| Sbjct 115629 GCACGAACGACACGGCGTGCACGACCCTCCT--TCTCATAACGCAAATACAATTCATTAA 115686 Query 37943 AATCATTCCCCCATACATC-GCATAATCCTGGACATTCGCATGGACACATTAGAGACCAT 38001 | || | ||||| ||||| ||| | ||| ||| ||| ||||| | || ||||| Sbjct 115687 ACTCTTCACCCCACACATCAGCA-AGTCCAGGAGCTTCATTAGGACAAAAGAGTGACCAA 115745 Query 38002 TCTTCATCTTTTTCTACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTAAATAAA 38061 | ||| | | || | |||||||| |||||| ||||| || | ||| ||| Sbjct 115746 TGAGAATCCTCCTTCACTCTCTCCATAAACAAATCATTCACCCACAAACCCAAAAACAAA 115805 Query 38062 TCTTTGGTTCTATATTCTTCGTTCCCTACATTCTTTCTTAAGCTTAGAAAATCGAATATA 38121 ||| | || | ||| || || || ||||||||| || || |||||| || ||| Sbjct 115806 TCTCGAGCTCGAATTTCCTCCTTTCCAGTATTCTTTCTCAAATCTAAAAAATCAAAAATA 115865 Query 38122 TCAGCGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGA 38181 || | ||||| || || | ||||| | | |||||| || |||| |||| || ||| Sbjct 115866 TCGGAATGCCAAGGCTCCAAATAAACGGCAAAGGCTCCTTTTCGTTTACCACCACCTTGA 115925 Query 38182 TTAATATATCTAACTGTGTTATTATATATTCTTAACATAGGTACTATACCATTAGATTTG 38241 | | || | | |||| || ||| | | ||| || | | ||||| || | Sbjct 115926 TCCACGTAACGGGCAGTGTCGTTGAATACACGAAGCATGGGAATGAGTCCATTGGAGGTT 115985 Query 38242 CCGTTTATACCGGATATATAAGTACCCTTAGCTCGTATATTACTTATCGACAATCCTATT 38301 ||||| | || || || | || || || || ||| | ||||| || || Sbjct 115986 CCGTTGGTTCCTCGAATGTAGGATCCAGAGGCACGAATGTTATGAACGGACAAGCCGATA 116045 Query 38302 CCACCTGCATGTTTTGATATTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTATA 38361 ||||| ||| || ||||| || || || || | ||||| | |||||| || Sbjct 116046 CCACCAGCACTCTTGGATATCAAGGCACACGTCTTGAGTGTATCGTAAATACCTGAAATG 116105 Query 38362 CTGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCG 38421 || || || || | | || || ||| | ||||||||| ||||| || || Sbjct 116106 GAATCGTCTTTCATGGCCACTAAGAAGCAAGAACTCATTTGAGGAGTGGGAGTACCAGCA 116165 Query 38422 TTAAATAATGTAGGAGATGCATGTATGAAC 38451 || || | |||||||| || || |||||| Sbjct 116166 TTGAAGAGAGTAGGAGAGGCGTGGATGAAC 116195 >seq93 Length=103736 Score = 147 bits (162), Expect = 2e-30 Identities = 576/888 (65%), Gaps = 27/888 (3%) Strand=Plus/Plus Query 11338 CTTTTGATATTCACTAACTCGTCGT-TCGAAAAAATTAGTCTTACCTTCTAGTGATAT-A 11395 |||| |||||||| ||||| || | || || || || |||||||| | ||| || | Sbjct 84572 CTTTGCATATTCACCAACTC-TCTTCTCAAAGAAGTTCGTCTTACCAGACACTGAAATCA 84630 Query 11396 TACTCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAACTCTGTT 11455 || || || | || ||||| | ||| | | || || ||| | |||| | Sbjct 84631 TATTCATCCAATCGAAT-GGATTTTGGACAAGGTAAACCTTATCATATCCTATCGAGACA 84689 Query 11456 AATAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATA 11515 | ||||| ||| || || ||||| || || || ||| | || | |||||||||| || Sbjct 84690 AGTAATCGATCAGCAACAAATTCAATGTATTGTTGCATGAGACGAGAATTCATACCAATC 84749 Query 11516 AGATCCACCGGAATAGCAACTGTCAAA--AACTCCTTTTCTATATTAACCGCATCAATGA 11573 | ||||| || | || | | || || || ||||| || || | ||| || ||| ||| Sbjct 84750 AAGTCCACAGGGAGAG--ATTCTCGAATGAATTCCTTCTCAATCTCAACAGCTTCACTGA 84807 Query 11574 TTATCGACGTTATAACTTCCTTAGA-----TGGTGGATGTAATAAATGTTTAAACATTAA 11628 | || || ||| | | || |||| || | | | | || || | Sbjct 84808 CCAATGAATGTACAACCTTTTGAGGCAATTTGGTATATTTGAGCATGGAATA--CAAGAG 84865 Query 11629 ACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAA 11688 ||| ||||| || ||||| ||||| |||| | || | |||||| || || || || Sbjct 84866 ACAAGCAAAGTCCGTGTGTAATCCTTCATCTCGAGAAATCAATTCATTGGAGAAGGTCAA 84925 Query 11689 TCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAA 11748 ||| |||||||| |||| || || |||||||| || | | || || ||| |||||| Sbjct 84926 TCCAGGCATCAAACCTCTCTTCTTCATCCAAAAGATGGAACAGAAAGATCCACTAAAGAA 84985 Query 11749 TATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATACCTTGTTGCTAGAT-A 11807 || || |||||| ||||| || | | || ||| || | | || | | || | | Sbjct 84986 GATACCTTCCACACAAGCAAAGGCAATCAATCGTTCAGCAAACAAGTTATC-CGAGTTGA 85044 Query 11808 TCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAA 11867 ||||||| |||||| ||| ||||||| ||| || | || || || || || | Sbjct 85045 TCCATTTCAAAGCCCAACGAGCCTTCTTTTGAACGGATGGAACAGTATCAATGGCATTGA 85104 Query 11868 ATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAA-ACT---ATAC 11923 | | | | | ||||| | | || |||| ||||| | | ||| | | | |||| Sbjct 85105 AGAGACGATGTCTTTCTCTCGTGTC-CTTA---ATGTAGGTTTCAATTAGAGTTGAATAC 85160 Query 11924 ATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAA 11983 || |||| ||||||||| || || || ||||| |||||||||||||||| || || | | Sbjct 85161 ATCTCTGCATGAATATTCTCAATGGCAATTTGGAATCCATAGAAACATCTGGCTTCAGGA 85220 Query 11984 CACTGTACATC-CACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGA 12042 || || || |||||| | || | | || |||||||| ||||||||||| | Sbjct 85221 ATTTGAACTTCAGCCATAAATTGTTGACAC-AAGTTCTCATTCACAATACCATCGGAGGC 85279 Query 12043 TGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTATCCCA 12102 ||||| || || | | | || || |||| || ||| | || | | | ||||| Sbjct 85280 AGCAAAGAAGGCCAAAACAGTCTTGATGAAGTGTTGTTCATTGGTATTGAGAGTTTCCCA 85339 Query 12103 ATCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATTG 12162 | | | | |||| | | ||| ||||||||| | ||||| ||| ||||| | | Sbjct 85340 TTGAGCAATATCTGTGTGGAGATCCACTTCTTCAGCAGTCCAGAAAGATGCCATGGCCTT 85399 Query 12163 TTTATACATTTTCCAGATATCATGATACTTAATAGGGAAAATAACGAA 12210 || ||||| | ||| | | |||| | || ||||| | |||||| Sbjct 85400 CTTGTACATCTCCCAAACCTTTTGATGTTCGATTGGGAAGAGAACGAA 85447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468521438334560