Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq36 219 6e-52 seq93 190 3e-43 seq40 86.0 8e-12 >seq36 Length=122865 Score = 219 bits (242), Expect = 6e-52 Identities = 824/1276 (65%), Gaps = 26/1276 (2%) Strand=Plus/Plus Query 65414 TCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGC 65473 |||| ||| || || || |||||||| ||| || | ||||||||| || ||||| Sbjct 115109 TCCTTGATAGGTCTCATAAGGTCCTTCTGTCTTGGCAACTTCACAACTGGCTGTCAATGC 115168 Query 65474 ACCGTAATAAATGGTTTCGAAGATCTTCTTATTT--AGATCTTGTGCTTCCAGGCTATCA 65531 | | |||| || |||||||| || |||| || | |||||| ||||| || || Sbjct 115169 AGCAAAATATATTGTTTCGAAAAT-TTCTCGATTCAAAATCTTG-GCTTCTTCACTCTCG 115226 Query 65532 AATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGT 65591 || ||| || | ||||| || || || ||||| |||||||| | ||| || || Sbjct 115227 AAGGGAAGATGCATCTTGATAAAGGCATCGGCCAATCCCTGAACACCCAAACCAATGGGA 115286 Query 65592 CTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATT 65651 | ||||||| ||||| || |||||| || ||||||||||| | || || || Sbjct 115287 CGATGTCTCATATTACTCTTTCTAGCTTCCTCAACTGGATAATAATTCTTGTCAATGATC 115346 Query 65652 TTATTGAGATTTCTGA---CAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAAT 65708 || || | ||| || ||||| ||||| | || || || | ||| | Sbjct 115347 TTGTTCAAATTCTTGGTGGCAATT---TTGACAATTTCAAACAATTGTTCATGATCGTAG 115403 Query 65709 ---CGC-TCATCT-ATT-ACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCT 65762 || || ||| ||| ||| || | | ||||| | ||||| ||||| || ||| Sbjct 115404 GTACGTGTCGTCTCATTGACATACTTTGGAAGTGCAATACTTGCCAAGTTACACACAGCT 115463 Query 65763 ACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTT 65822 || |||| | | | | |||| || || ||||| || | || | ||||| ||| Sbjct 115464 ACTTCATCTGGAGCTGTGTATTCAATAATTTCAGTACACAAGTTGGAGGATTTGATCGTT 115523 Query 65823 CCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTA 65882 || | |||||||||||| ||| | ||||| |||||||||||||| ||| | ||| | Sbjct 115524 CCAAGATTTTGTTGATTTGATTTTCTATTACATGCATCCTTATAAAGCATGTAAGGAACA 115583 Query 65883 CCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATA-GA 65941 ||||| ||||| || | || ||||| || ||| | || |||| | | | | Sbjct 115584 CCAGTCTCAATTTGTGCCTCAATAATTGCAAACCAAAGCTCTTGAGCACGAACGACACGG 115643 Query 65942 TTTGTATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAAC 66001 || | | | || | || || | ||||||| | ||||| || ||||| || Sbjct 115644 CGTGCACGACCCTCCT-TCTCATAACGCAAATACAATTCATTAAACTCTTCACCCCACAC 115702 Query 66002 ATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCAC 66061 || | | ||||||| ||||| ||||| | | ||||| | || |||||||| Sbjct 115703 ATCAGCAAGTCCAGGAGCTTCATTAGGACAAAAGAGTGACCAATGAGAATCCTCCTTCAC 115762 Query 66062 TCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTC 66121 || | |||||| | |||| | ||| | | | | ||| ||||||| | || | ||| Sbjct 115763 TCTCTCCATAAACAAATCATTCACCCACAAACCCAAAAACAAATCTCGAGCTCGAATTTC 115822 Query 66122 CTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTC 66181 ||| ||||| ||||||||| | | ||| | || | | |||||| ||||||| || || Sbjct 115823 CTCCTTTCCAGTATTCTTTCTCAAATCTAAAAAATCAAAAATATCGGAATGCCAAGGCTC 115882 Query 66182 CAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGT 66241 ||| || | ||| | |||| ||||| || || ||||| | ||| | || || Sbjct 115883 CAAATAAACGGCAAAGGCTCCTTTTCGTTTACCACCACCTTGATCCACGTAACGGGCAGT 115942 Query 66242 GTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGAT 66301 || || | || | | ||| ||||| | |||||||| || || ||||| || || Sbjct 115943 GTCGTTGAATACACGAAGCATGGGAATGAGTCCATTGGAGGTTCCGTTGGTTCCTCGAAT 116002 Query 66302 ATAGCTTCCACTTGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGA 66361 ||| |||| |||||||| ||| || || | || || || || || | || || Sbjct 116003 GTAGGATCCAGAGGCACGAATGTTATGAACGGACAAGCCGATACCACCAGCACTCTTGGA 116062 Query 66362 GATTAATGCGCATCGT-TTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGT 66420 || || || || ||| || | ||||| || || || || ||| || ||||| Sbjct 116063 TATCAAGGCACA-CGTCTTGAGTGTATCGTAAATACCTGAAATGGAATCGTCTTTCATGG 116121 Query 66421 TAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAG 66480 | || || || | |||||| || ||| || ||||| || | ||||||| Sbjct 116122 CCACTAAGAAGCAAGAACTCATTTGAGGAGTGGGAGTACCAGCATTGAAGAGAGTAGGAG 116181 Query 66481 AAGCGTGCGTAAACCATTTTTCAG---AAAGTAGATTGTACGTCTCAATAGCTGAGTCTA 66537 | ||||| | ||| | ||| ||||| | ||| || |||||||| || | Sbjct 116182 AGGCGTGGATGAAC---ATACCAGTGCTAAGTAATTCGTAGGTTTCAATAGCCTTCTCAA 116238 Query 66538 TATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGA 66597 |||| | |||||| || | |||||||| |||||||| ||||||| ||| | | Sbjct 116239 TATCGGAACCATGAATGCCCAAACTCACACGCATGAACATGTGTTGAGGTCGTTCGGCAA 116298 Query 66598 TCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGT 66657 | | | ||| | ||||||| | |||| | ||| ||||| ||||| || | | Sbjct 116299 TAACATCTCCGAGTTTGAGCAAGTAGCTTCTTTCAAGAGTCTTAAAGCCAAAGTAATCGA 116358 Query 66658 ATGAAAAGTCTCGTTC 66673 || | | |||||||| Sbjct 116359 ATTGATAATCTCGTTC 116374 >seq93 Length=103736 Score = 190 bits (210), Expect = 3e-43 Identities = 395/583 (68%), Gaps = 4/583 (1%) Strand=Plus/Plus Query 36172 GTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 36231 ||||| || || |||| | ||| ||||| ||||| || || | ||| ||||| | || Sbjct 84881 GTGTAATCCTTCATCTCGAGAAATCAATTCATTGGAGAAGGTCAATCCAGGCATCAAACC 84940 Query 36232 ACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGC 36291 | ||| || | |||||| ||||| || |||||| |||||| || ||||| || Sbjct 84941 TCTCTTCTTCATCCAAAAGATGGAACAGAAAGATCCACTAAAGAAGATACCTTCCACACA 85000 Query 36292 CGCAAAGGCAATAAGTCTCTCTCCATAACCGGCA-CTGTCATGTATCCACTTTTGAGCCC 36350 ||||||||||| | || || || | | | | | || ||||| || ||||| Sbjct 85001 AGCAAAGGCAATCAATCGTTCAGCAAACAAGTTATCCGAGTTG-ATCCATTTCAAAGCCC 85059 Query 36351 AATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGttttttt 36410 || |||||||||| || | || | || || || ||||| |||||| | | ||| Sbjct 85060 AACGAGCCTTCTTTTGAACGGATGGAACAGTATCAATGGCATTGAAGAGACGATGTCTTT 85119 Query 36411 CATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTT 36470 | | | || |||| || || ||||| | | |||||| || | |||||| || | Sbjct 85120 CTCTCGTGTCCTTAATGTAGGTTTCAATTAGAGTTGAATACATCTCTGCATGAATATTCT 85179 Query 36471 CAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAA 36530 ||||||| ||||| ||||| ||||||||||| || || | ||| || ||||| | || Sbjct 85180 CAATGGCAATTTGGAATCCATAGAAACATCTGGCTTCAGGAATTTGAACTTCAGCCATAA 85239 Query 36531 ATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACAT 36590 || ||| || || |||||||| || || || ||| ||||| || ||||| ||| Sbjct 85240 ATTGTTGACACAAGTTCTCATTCACAATACCATCGGAGGCAGCAAAGAAGGCCAAAACAG 85299 Query 36591 GTTTTATAAAATATTTTTCGTTTGGTGTT-AGTTTATTCCAATCATTGATATCTTTAGAT 36649 || || || | || ||| ||||| || || | | ||| | | |||||| | Sbjct 85300 TCTTGATGAAGTGTTGTTC-ATTGGTATTGAGAGTTTCCCATTGAGCAATATCTGTGTGG 85358 Query 36650 ATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATG 36709 | |||||||||||| | ||||| || |||||| ||||| || ||||| | ||| | Sbjct 85359 AGATCCACTTCTTCAGCAGTCCAGAAAGATGCCATGGCCTTCTTGTACATCTCCCAAACC 85418 Query 36710 TCATGATATTGAATTGGAAAAATAACAAATCTATTTTGATTTT 36752 | |||| || ||||| || | ||| || | || | |||||| Sbjct 85419 TTTTGATGTTCGATTGGGAAGAGAACGAAACGATGTGGATTTT 85461 >seq40 Length=471424 Score = 86.0 bits (94), Expect = 8e-12 Identities = 154/220 (70%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 83796 GTGATAGGTATTGATGAAGGACAGTTCTTTCCAGACATTGTTGAATTCTGTG-AGCGTAT 83854 || || || ||||||||||| || |||||||| || | ||||| || |||| ||| | Sbjct 411274 GTCATTGGAATTGATGAAGGTCAATTCTTTCCTGATTTAGTTGACTTTTGTGAAGCAGCT 411333 Query 83855 GGCAAACGAAGGAAAAATAGTTATAGT-AGCAGCACTCGATGGGACATTTCAACGTAAAC 83913 ||||| | ||| ||||| || || || ||| || | ||||| || || ||| | |||| Sbjct 411334 -GCAAATGGAGGTAAAATTGTGATTGTGAGC-GCCTTGGATGGAACTTTCCAAAGAAAAC 411391 Query 83914 CGTTTAATAATATCTTGGATATTATTCCATTATCTGAAATGGTGGTAAAACTAACTGCAG 83973 | ||| | | ||||| | | |||||| | |||||| || || ||| | | || | Sbjct 411392 CTTTTGGTGACGTCTTGCGTTTGATTCCAATGGCTGAAAGTGTTGTGAAATTGAAGGCTG 411451 Query 83974 TGTGTATGAAATGCTTTAAGGAGGCTTCCTTTTCTAAACG 84013 | || ||| |||| || || ||| | ||| ||||||| Sbjct 411452 TTTGCATGGTTTGCTGCAAAGATGCTGCTTTTACTAAACG 411491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658168077610160