Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq42 116 4e-21 seq82 98.7 1e-15 seq29 86.0 6e-12 >seq42 Length=292872 Score = 116 bits (128), Expect = 4e-21 Identities = 154/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 139552 CAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTC 139611 |||||| ||||| | || || |||||||||||||| ||||| || || || ||| Sbjct 165924 CAAAACCAAGTGCAATGTTGATTCTTTTTGAATGTTGTAATCAGACAAGGTTCTTCCGTC 165865 Query 139612 TTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 139671 ||| | || || || ||| |||| || | ||| || || || || || ||||| ||||| Sbjct 165864 TTCTAATTGCTTTCCGGCAAAGATGAGTCTTTGTTGGTCTGGTGGAATTCCTTCCTTGTC 165805 Query 139672 GGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGT 139731 ||| ||| ||| | | ||| | || || ||| ||| ||||||| || | || Sbjct 165804 TTGGATCTTTGATTTAACGTTTTCAATGGTATCATTGGACTCAACCTCAAGAGTAATGGT 165745 Query 139732 CTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||| |||||||| ||||| ||||| ||||||||| Sbjct 165744 CTTTCCGGTCAAGGTTTTAACGAAGATTTGCATA 165711 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 139552 CAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTC 139611 |||||| | ||||| |||||||||||||||||||| |||||| | || || || Sbjct 166380 CAAAACAAGGTGAAGAGTAGACTCTTTTTGAATGTTGTAATCGGAGAGGGTTCTTCCATC 166321 Query 139612 TTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 139671 ||| | || |||||||| | |||| | ||| || || ||||| |||||||| || || Sbjct 166320 TTCCAATTGCTTACCAGCGAAAATCAATCTTTGTTGGTCTGGAGGAATGCCTTCCTTATC 166261 Query 139672 GGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGT 139731 ||| ||| || | | || | || || ||| || || || | || | || Sbjct 166260 TTGGATCTTTGACTTGACATTCTCGATGGTATCATTGGATTCGACTTCCAATGTAATGGT 166201 Query 139732 CTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||| ||||| ||||| || || |||||||| Sbjct 166200 CTTGCCAGTCAAAGTTTTAACAAAGATTTGCAT 166168 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| || | ||| || ||||| | || || || ||||| ||||| || ||| | Sbjct 165710 CCACCTCTCAATCTCAAGACCAAGTGGAGAGTGGATTCCTTTTGGATGTTGTAGTCGGAC 165651 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || |||||| | |||||||||||| | |||| |||||| ||||| || || Sbjct 165650 AAGGTTCTTCCGTCTTCCAATTGTTTACCAGCAAAAATCAAACGTTGTTGATCAGGTGGA 165591 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||| ||||| ||| || ||| | | || | |||||| ||| || || Sbjct 165590 ATTCCTTCCTTGTCTTGGATCTTGCTTTTCACGTTCTCAATCGTGTCGTTGGATTCGACT 165531 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | ||||| || || | || || ||||| |||||||| Sbjct 165530 TCGAGAGTGATAGTCTTACCAGTGAGGGTCTTGACGAAGATTTGCAT 165484 Score = 82.4 bits (90), Expect = 8e-11 Identities = 147/212 (69%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 139555 AACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTC 139614 ||| | ||| | || || || ||||||||||| || ||| | || || |||||| Sbjct 166149 AACAAGGTGCAATGTGGATTCCTTTTGAATGTTGTAGTCGGAGAGAGTTCTTCCGTCTTC 166090 Query 139615 GAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 139674 | |||||||||||| | |||| |||||| ||||| || || || ||||| || || | Sbjct 166089 CAATTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCCTTATC-TT 166031 Query 139675 GATTTTTTGT-TTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCT 139733 || | || | || | | ||| | |||||| ||| || || || | || | |||| Sbjct 166030 GAATCTTGCTCTTCACGTTTTCGATGGTGTCGTTGGATTCAACTTCCAAAGTAATTGTCT 165971 Query 139734 TGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 | || || | || || ||||| ||||||||| Sbjct 165970 TACCAGTGAGGGTCTTGACGAAGATTTGCATA 165939 >seq82 Length=211372 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| || | ||| || ||||| | ||||| || ||||||||||| || || | Sbjct 147706 CCTCCTCTCAATCTCAAGACCAAGTGCAATGTAGATTCCTTTTGAATGTTGTAGTCAGAC 147765 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || ||||| | || || || ||| |||||| | ||| ||||| ||||| Sbjct 147766 AAGGTTCTGCCATCTTCCAATTGCTTTCCGGCAAAGATCAATCTTTGTTGATCTGGAGGA 147825 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| ||||| ||| | |||| || | | || | |||||| ||| || || Sbjct 147826 ATACCTTCCTTGTC-TTGAATCTTTGACTTGACATTCTCGATGGTGTCGTTGGATTCGAC 147884 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | || | ||||| |||||||| || || ||||| |||||||| Sbjct 147885 CTCCAAAGTGATGGTCTTACCGGTCAAGGTCTTAACGAAAATTTGCAT 147932 >seq29 Length=427163 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || || || ||||||||||| || ||| || || || ||||| | || || || Sbjct 48751 GTGGATTCCTTTTGAATGTTGTAGTCGGACAAGGTTCTTCCATCTTCTAATTGCTTTCCG 48692 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||| || | ||| ||||| || || || ||||| ||||| ||| || ||| Sbjct 48691 GCAAAGATGAGTCTTTGTTGATCAGGTGGAATTCCTTCCTTGTCTTGGATCTTGCTTTTC 48632 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||||| ||| || || |||| || | |||||||| || || || Sbjct 48631 ACGTTCTCGATTGTGTCGTTGGATTCGACTTCAAGAGTGATAGTCTTGCCAGTTAAAGTC 48572 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| |||||||| Sbjct 48571 TTGACGAAGATTTGCAT 48555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496060440740800