Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq36 250 4e-61 seq93 190 3e-43 >seq36 Length=122865 Score = 250 bits (276), Expect = 4e-61 Identities = 1200/1888 (64%), Gaps = 70/1888 (4%) Strand=Plus/Plus Query 78718 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 78777 ||||||||||||| | ||| || |||| || | | ||| |||||||| || || | Sbjct 114504 GTGAATTGAATGGCATCGGCAGCTGGTTGTGTTCTCAAATAATACATTCCAGTCTTCAAT 114563 Query 78778 CCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGA-ATAACTCGGATCTGCTAT 78836 || |||||| | || || ||||| | | |||||| || | ||| || || Sbjct 114564 CCCTTACTCCAAGCATAAAAGTGCATGGAAGACATTTTGGAGATGGAT-GGAGTGGCAAT 114622 Query 78837 ATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTAT 78896 | || ||| | |||||| |||||| ||||| | | || || || | | | Sbjct 114623 AAAGACATTGAGTGATTGAGATTGATCAATGAATGGAGCTCTCTCAATGGCAAGATCCAA 114682 Query 78897 GATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAG 78956 | |||||||| |||||||||| ||| || || | | ||||||||| ||||||| Sbjct 114683 CAAACTCTTTTGTTTGATTTCCCAAACAGTCTTGTACAATTCCTTAATATCATCTGGAAT 114742 Query 78957 GTTTGTA---TTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCTTCATT 79013 | | || ||||| || || | | || ||||| |||| || | | ||| Sbjct 114743 TCCAGCAATGTTTTGAATAGAACCTCTGTTGGCAATAATTTGATTCACAATATTTGAATT 114802 Query 79014 CCATAATTTTCTCTCGGTTAAA-----ACTCTAAGGAGATGCGGATTAACTACTTGAAAT 79068 ||| | || | || | || | |||| ||| |||| ||| || || Sbjct 114803 CCACA-TTCCCAAACGAATCAAGTCAGATACTAA----ATGTCTGTTAATGACTGGATAT 114857 Query 79069 TCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGATTCATTA 79128 || ||| ||| || | | || || | ||| || ||||| || | |||||||| Sbjct 114858 TCACCACTCAAGACACGTCTCGTATACACATTCGAAGTGTATGGCTCAAAACATTCATTA 114917 Query 79129 TTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTATTTCTA 79188 || |||||||||||| || ||||| |||||||| || || || | ||||||||| | | Sbjct 114918 TTACCCAAAATTTGACTGGTGGATGCAGTTGGCATTGGAGCAACAAGTAAACTATTACGA 114977 Query 79189 AGACCGTATGATCTGATTTTATCTTTTAGAGATTCCCAATCCCA-------------AAG 79235 | || ||| |||| | | | | | |||||||||||| | | Sbjct 114978 ACTCCATATTTGAGAATTTCTTGTCTCAAACCTTCCCAATCCCATCTTCCACTCGTGATG 115037 Query 79236 ATC--------AGACGGGACAACATTC------CAAAGATCATATTGTAGAATACCGTTA 79281 ||| | | || || | ||| |||| |||| ||| | ||| || || Sbjct 115038 ATCTTTCCTTCAAAAGGTTCACCTTTCATGGTCCAAAATTCATGTTGGAAAATTCCTCTA 115097 Query 79282 CTAGCGTATGA--TCCTGTGTATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAAC 79339 || | | || |||| || || |||||||||||||| | | ||| | |||||||| Sbjct 115098 CT--CATTGGACTTCCTTGATAGGTCTCATAAGGTCCTTCTGTCTTGGCAACTTCACAAC 115155 Query 79340 TCGCCTCTAATGCTCCGTAATAAATGGTTTCGAAAATCTTCTT-ATTGAGA-TCTTGTGC 79397 | || ||||| | |||| || ||||||||||| |||| ||| | | ||||| || Sbjct 115156 TGGCTGTCAATGCAGCAAAATATATTGTTTCGAAAAT-TTCTCGATTCAAAATCTTG-GC 115213 Query 79398 TTCTAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACC 79457 |||| || || || ||| || | ||||| || || || ||||| |||||||| Sbjct 115214 TTCTTCACTCTCGAAGGGAAGATGCATCTTGATAAAGGCATCGGCCAATCCCTGAACACC 115273 Query 79458 AATACCGATAGGTCTATGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATT 79517 | ||| || || | ||||||| ||||| || |||||| || ||||||||||| Sbjct 115274 CAAACCAATGGGACGATGTCTCATATTACTCTTTCTAGCTTCCTCAACTGGATAATAATT 115333 Query 79518 AATATCTATAATTTTATTGAGATTCCTGACTATTACTTTGACCA---CATCCTTTAGTT- 79573 | || || || || || | |||| || | |||||| | || | | ||| Sbjct 115334 CTTGTCAATGATCTTGTTCAAATTCTTGGTGGCAATTTTGACAATTTCAAACAATTGTTC 115393 Query 79574 -TGA--GAAAAT-CAAATCGTCCATCTATTACAAACATGTTCAACGCGACAGATGCCAGA 79629 ||| | | | | ||||| || | ||| || | | || | | ||||| Sbjct 115394 ATGATCGTAGGTACGTGTCGTC--TCATTGACATACTTTGGAAGTGCAATACTTGCCAAG 115451 Query 79630 TTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCAGAGGTTACTA 79689 ||||| || ||||| |||| | | | | |||| || |||||||| || | ||| Sbjct 115452 TTACACACAGCTACTTCATCTGGAGCTGTGTATTCAATAATTTCAGTACACAAGTTGGAG 115511 Query 79690 CACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGA 79749 | || || ||||| | |||||||||||| ||| | ||||| |||||||||||||| Sbjct 115512 GATTTGATCGTTCCAAGATTTTGTTGATTTGATTTTCTATTACATGCATCCTTATAAAGC 115571 Query 79750 ATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCC 79809 ||| | ||| |||||| ||||| || | || ||||| || ||| | || |||| Sbjct 115572 ATGTAAGGAACACCAGTCTCAATTTGTGCCTCAATAATTGCAAACCAAAGCTCTTGAGCA 115631 Query 79810 TTTATTATA-GACTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTC 79868 | | | | | || | | | || | || || | ||| ||| | ||||| Sbjct 115632 CGAACGACACGGCGTGCACGACCCTCCT-TCTCATAACGCAAATACAATTCATTAAACTC 115690 Query 79869 GTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGACCACTCTCC 79928 || ||||| ||||| | | ||||||| ||| | |||||| | | ||||| | Sbjct 115691 TTCACCCCACACATCAGCAAGTCCAGGAGCTTCATTAGGACAAAAGAGTGACCAATGAGA 115750 Query 79929 ATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCT 79988 ||| ||||| |||| | |||||| | |||| | ||| | | | | ||| | ||||| Sbjct 115751 ATCCTCCTTCACTCTCTCCATAAACAAATCATTCACCCACAAACCCAAAAACAAATCTCG 115810 Query 79989 GGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGA 80048 | || | ||||| ||||| ||||||||| | | ||| | || | | |||||| || Sbjct 115811 AGCTCGAATTTCCTCCTTTCCAGTATTCTTTCTCAAATCTAAAAAATCAAAAATATCGGA 115870 Query 80049 ATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTAT 80108 |||||| || ||||| || | ||| | |||| |||||| || || ||||| | Sbjct 115871 ATGCCAAGGCTCCAAATAAACGGCAAAGGCTCCTTTTCGTTTACCACCACCTTGATCCAC 115930 Query 80109 GTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATT 80168 ||| | || |||| || | || | | ||| ||||| | |||||||| || || || Sbjct 115931 GTAACGGGCAGTGTCGTTGAATACACGAAGCATGGGAATGAGTCCATTGGAGGTTCCGTT 115990 Query 80169 GGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCC 80228 ||| || || ||| |||| ||||||||| ||| || || | || || || || Sbjct 115991 GGTTCCTCGAATGTAGGATCCAGAGGCACGAATGTTATGAACGGACAAGCCGATACCACC 116050 Query 80229 TGCCATTTTAGAGATTAATGCGCATCGT-TTTAACGTATCATAGATGCCCTCTATGCTAT 80287 || | || || || || || || ||| || | ||||| || || || ||| || Sbjct 116051 AGCACTCTTGGATATCAAGGCACA-CGTCTTGAGTGTATCGTAAATACCTGAAATGGAAT 116109 Query 80288 CATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAA 80347 | || ||||| | || || || | |||||| || ||| || ||||| | Sbjct 116110 CGTCTTTCATGGCCACTAAGAAGCAAGAACTCATTTGAGGAGTGGGAGTACCAGCATTGA 116169 Query 80348 ATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAG---ACAGTAGATTGTACGTCTCAA 80404 | | |||||||| ||||| | ||| | ||| |||| | ||| || |||| Sbjct 116170 AGAGAGTAGGAGAGGCGTGGATGAAC---ATACCAGTGCTAAGTAATTCGTAGGTTTCAA 116226 Query 80405 TAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAACATGTGCTGAG 80464 |||| || ||||| | |||||| || | |||||||| |||||||| |||| Sbjct 116227 TAGCCTTCTCAATATCGGAACCATGAATGCCCAAACTCACACGCATGAACATGTGTTGAG 116286 Query 80465 GTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAAC 80524 ||| ||| | || | | ||| | |||||| | |||| | ||| ||||| | Sbjct 116287 GTCGTTCGGCAATAACATCTCCGAGTTTGAGCAAGTAGCTTCTTTCAAGAGTCTTAAAGC 116346 Query 80525 CAAAATAGTTGTATGAAAAGTCTCGTTC 80552 |||| || | | || | | |||||||| Sbjct 116347 CAAAGTAATCGAATTGATAATCTCGTTC 116374 >seq93 Length=103736 Score = 190 bits (210), Expect = 3e-43 Identities = 388/574 (68%), Gaps = 2/574 (0%) Strand=Plus/Plus Query 49981 CCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTT 50040 || || |||| | ||| | ||| ||||| || || | ||| ||||| | || | ||| Sbjct 84888 CCTTCATCTCGAGAAATCAATTCATTGGAGAAGGTCAATCCAGGCATCAAACCTCTCTTC 84947 Query 50041 TTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAG 50100 || | |||||| ||||| || || ||| ||||||||| ||||| || |||||| Sbjct 84948 TTCATCCAAAAGATGGAACAGAAAGATCCACTAAAGAAGATACCTTCCACACAAGCAAAG 85007 Query 50101 GCAACAAGTCTCTCTCCATAACTGGCGCTGTCATGT-ATCCACTTTTGAGCCCAATCGGC 50159 |||| | || || || ||| | | | | ||||| || ||||||| || Sbjct 85008 GCAATCAATCGTTCAGCA-AACAAGTTATCCGAGTTGATCCATTTCAAAGCCCAACGAGC 85066 Query 50160 CTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACT 50219 |||||||| || | || | || || |||||||| |||||| | | |||| | | Sbjct 85067 CTTCTTTTGAACGGATGGAACAGTATCAATGGCATTGAAGAGACGATGTCTTTCTCTCGT 85126 Query 50220 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 50279 || |||| || || || || | | |||||| || | |||||| || |||||||| Sbjct 85127 GTCCTTAATGTAGGTTTCAATTAGAGTTGAATACATCTCTGCATGAATATTCTCAATGGC 85186 Query 50280 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTC 50339 || || ||||| ||||||||||| || || | ||| || ||||| | |||| ||| Sbjct 85187 AATTTGGAATCCATAGAAACATCTGGCTTCAGGAATTTGAACTTCAGCCATAAATTGTTG 85246 Query 50340 AGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTAT 50399 | || || |||||||| || || || ||| ||||| || ||||| ||| || || Sbjct 85247 ACACAAGTTCTCATTCACAATACCATCGGAGGCAGCAAAGAAGGCCAAAACAGTCTTGAT 85306 Query 50400 AAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTAC 50459 || |||| ||| |||| | || | | ||| | | |||||| | | ||| || Sbjct 85307 GAAGTGTTGTTCATTGGTATTGAGAGTTTCCCATTGAGCAATATCTGTGTGGAGATCCAC 85366 Query 50460 TTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATA 50519 |||||| | ||||| || |||||| ||||| || ||||| | ||| | | |||| Sbjct 85367 TTCTTCAGCAGTCCAGAAAGATGCCATGGCCTTCTTGTACATCTCCCAAACCTTTTGATG 85426 Query 50520 TTGGATTGGGAAAATAACAAATCTATTTGGATTT 50553 || ||||||||| | ||| || | || ||||||| Sbjct 85427 TTCGATTGGGAAGAGAACGAAACGATGTGGATTT 85460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718263646421360