Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq93 176 4e-39 >seq93 Length=103736 Score = 176 bits (194), Expect = 4e-39 Identities = 608/923 (66%), Gaps = 48/923 (5%) Strand=Plus/Plus Query 13524 TAAAAATCAACATCTAATGAAAAAACATTATCG-TCTTTGTTAGAAATAACGCCCATTT- 13581 ||||||||| |||| ||| ||| || || || |||||| | || |||| | ||| Sbjct 84516 TAAAAATCATCATCCAATCTAAAGACCTTCTCTCTCTTTGGT-GACATAATG----TTTG 84570 Query 13582 --TTTG-ATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATAT 13638 |||| |||||||| |||||| || ||||||||||| || ||||| || ||| || Sbjct 84571 CCTTTGCATATTCACCAACTCTCTTCTCAAAGAAGTTCGTCTTACCAGACACTGAAATCA 84630 Query 13639 TTTCCATAAAATCAAATGGATTTATTGACA---TAAACACTTTATCACAACCTAGTTCTA 13695 | | ||| |||| ||||||||| | |||| ||| || |||||| | |||| | Sbjct 84631 TATTCATCCAATCGAATGGATTT-TGGACAAGGTAA--ACCTTATCATATCCTATCGAGA 84687 Query 13696 ATAGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTA 13755 ||||||| |||||||| ||| ||||| ||||| ||| | | | |||||||||| | Sbjct 84688 CAAGTAATCGATCAGCAACAAATTCAATGTATTGTTGCATGAGACGAGAATTCATACCAA 84747 Query 13756 TTAGTTTTACAGGAATTATATTGGTTAA-AAATTCTTTTTCTATAGACACAGCCTCTTTT 13814 | | | ||||| | | ||| || ||||| || || || ||||| || | Sbjct 84748 TCAAGTCCACAGGGA-GAGATTCTCGAATGAATTCCTTCTCAATCTCAACAGCTTCACTG 84806 Query 13815 A-TAATAATTGTAATAATCTCATTAG--AAGGAGG-ATATTTTAG-ATGTTTAAAAATTA 13869 | ||| | ||| | || || | || || || |||||| || ||| | | | | Sbjct 84807 ACCAATGAATGT-ACAACCTTTTGAGGCAATTTGGTATATTTGAGCATG-GAATACAAGA 84864 Query 13870 AACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTA 13929 ||| ||||| || || | || ||||||| | ||| | ||| || || || || | Sbjct 84865 GACAAGCAAAGTCCGTGTGTAATCCTTCATCTCGAGAAATCAATTCATTGGAGAAGGTCA 84924 Query 13930 ATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGA 13989 |||| |||||||| |||| || || | |||||| || | | || || || ||||| Sbjct 84925 ATCCAGGCATCAAACCTCTCTTCTTCATCCAAAAGATGGAACAGAAAGATCCACTAAAGA 84984 Query 13990 ATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCG 14049 | || || || || |||||| || || |||||||| ||||| | || | || Sbjct 84985 AGATACCTTCCACACAAGCAAAGGCAATCAATCGTTCAGCAAACAA------GTTATCCG 85038 Query 14050 A---TATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAG 14106 | |||||||| |||||| || || |||| || | | || ||||| | Sbjct 85039 AGTTGATCCATTTCAAAGCCCAACGAGCCTTCTTTTGAACGGATGGAACAGTATCAATGG 85098 Query 14107 CATTAAATA-AATAT-TCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCT 14164 |||| || | | || || |||||| || ||| |||||| || ||||| || || | Sbjct 85099 CATTGAAGAGACGATGTCTTTCTCTCGTGTCCTT--AATGTAGGTTTCAATTAG--AGTT 85154 Query 14165 --ATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCT 14222 |||||| || | || || || || || || || || || ||||| || ||||| ||| Sbjct 85155 GAATACATCTCTGCATGAATATTCTCAATGGCAATTTGGAATCCATAGAAACATCTGGCT 85214 Query 14223 TCCGACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCA 14282 || | ||| ||||| | |||| || ||| || ||||| || |||||||| Sbjct 85215 TCAGGAATTTGAACTTCAGCCATAAATTGTTGACACAAGTTCTCATTCACAATACCATCG 85274 Query 14283 CTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTG---TTGAGT 14339 || ||||| || ||||| | | || || |||| ||| ||||||| ||||| Sbjct 85275 GAGGCAGCAAAGAAGGCCAAAACAGTCTTGATGAAGTGTTG---TTCATTGGTATTGAGA 85331 Query 14340 TTTTTCCAATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCG 14399 ||| ||| | | | ||| | ||||| ||||| ||| | ||||| ||| || Sbjct 85332 GTTTCCCATTGAGCAATATCTGTGTGGAGATCCACTTCTTCAGCAGTCCAGAAAGATGCC 85391 Query 14400 ACAGCTTTTTTATACATTACCCA 14422 | || || || ||||| |||| Sbjct 85392 ATGGCCTTCTTGTACATCTCCCA 85414 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479724557951600