Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq93 185 8e-42 >seq93 Length=103736 Score = 185 bits (204), Expect = 8e-42 Identities = 613/923 (66%), Gaps = 48/923 (5%) Strand=Plus/Plus Query 13312 TAAAAATCAACATCTAATGAAAAAACATTATCG-TCTTTGTTAGAAATAACGCCCATTT- 13369 ||||||||| |||| ||| ||| || || || |||||| | || |||| | ||| Sbjct 84516 TAAAAATCATCATCCAATCTAAAGACCTTCTCTCTCTTTGGT-GACATAATG----TTTG 84570 Query 13370 --TTTG-ATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATAT 13426 |||| |||||||| |||||| || ||||| ||||| || ||||| || ||| || Sbjct 84571 CCTTTGCATATTCACCAACTCTCTTCTCAAAGAAGTTCGTCTTACCAGACACTGAAATCA 84630 Query 13427 TTTCCATAAAATCGAATGGATTTGTTGACA---TAAACACTTTATCACAACCTAGTTCTA 13483 | | ||| |||||||||||||| | |||| ||||| |||||| | |||| || | Sbjct 84631 TATTCATCCAATCGAATGGATTT-TGGACAAGGTAAACC--TTATCATATCCTA--TCGA 84685 Query 13484 -ATAA-TAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACC 13541 | || ||||| |||||||| ||| ||||| ||||| ||| | | | |||||||||| Sbjct 84686 GACAAGTAATCGATCAGCAACAAATTCAATGTATTGTTGCATGAGACGAGAATTCATACC 84745 Query 13542 TATTAGTTTTACAGGAATTATATTAGTTAAA-AATTCTTTTTCTATAGACACAGCCTCGT 13600 || | | ||||| | | ||| || ||||| || || || ||||| || Sbjct 84746 AATCAAGTCCACAGGGAG-AGATTCTCGAATGAATTCCTTCTCAATCTCAACAGCTTCAC 84804 Query 13601 TTAT-AAT-AATCTTAATAATGTCATTAG--AAGGAGG-ATATTTTAG-ATGTTTAAAAA 13654 | | ||| ||| | | || | | || || || |||||| || ||| | || Sbjct 84805 TGACCAATGAATGT--ACAACCTTTTGAGGCAATTTGGTATATTTGAGCATGGAATACAA 84862 Query 13655 TTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATG 13714 | ||| ||||| || || | || ||||||| | ||| | ||| || || || | Sbjct 84863 G-AGACAAGCAAAGTCCGTGTGTAATCCTTCATCTCGAGAAATCAATTCATTGGAGAAGG 84921 Query 13715 TTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAA 13774 | ||||| |||||||| |||| || || | |||||| || | | ||| ||||| || Sbjct 84922 TCAATCCAGGCATCAAACCTCTCTTCTTCATCCAAAAGATGGAACAGAAAGATCCACTAA 84981 Query 13775 AGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGT 13834 |||| || || || || |||||| || || | |||||| ||||| | | | | Sbjct 84982 AGAAGATACCTTCCACACAAGCAAAGGCAATCAATCGTTCAGCAAACAA-GTTATCCGAG 85040 Query 13835 TTGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTG 13894 ||||| |||||| |||||| || || |||| || | | || || || | Sbjct 85041 TTGAT--CCATTTCAAAGCCCAACGAGCCTTCTTTTGAACGGATGGAACAGTATCAATGG 85098 Query 13895 CATTGAATAAATGTT--CCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCT 13952 ||||||| | | | | | |||||| || ||| |||||| || ||||| || || | Sbjct 85099 CATTGAAGAGACGATGTCTTTCTCTCGTGTCCTT--AATGTAGGTTTCAATTAG--AGTT 85154 Query 13953 --ATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCT 14010 |||||| || | || || || || || || || || || ||||| |||||||| ||| Sbjct 85155 GAATACATCTCTGCATGAATATTCTCAATGGCAATTTGGAATCCATAGAAACATCTGGCT 85214 Query 14011 TCTGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCA 14070 || | ||| || || | |||| || |||||| ||||| ||||||||||| Sbjct 85215 TCAGGAATTTGAACTTCAGCCATAAATTGTTGACACAAGTTCTCATTCACAATACCATCG 85274 Query 14071 CTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTG---TTGAGT 14127 || ||||| || ||||| | | || || |||| ||| ||||||| ||||| Sbjct 85275 GAGGCAGCAAAGAAGGCCAAAACAGTCTTGATGAAGTGTTG---TTCATTGGTATTGAGA 85331 Query 14128 TTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCG 14187 ||| ||| | || | ||| | ||||| ||||| ||| | ||||| ||| || Sbjct 85332 GTTTCCCATTGAGCAATATCTGTGTGGAGATCCACTTCTTCAGCAGTCCAGAAAGATGCC 85391 Query 14188 ACAGCTTTTTTATACATTACCCA 14210 | || || || ||||| |||| Sbjct 85392 ATGGCCTTCTTGTACATCTCCCA 85414 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478585366125360