Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq120 113 3e-20 seq42 113 3e-20 seq38 109 4e-19 seq26 104 2e-17 seq151 100 2e-16 seq76 89.7 4e-13 seq82 86.0 5e-12 seq29 82.4 6e-11 >seq120 Length=320511 Score = 113 bits (124), Expect = 3e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 |||||||| ||||| ||||| | || || || || ||||||| |||||||| || Sbjct 60589 CCTCCACGAAGTCTCAACACAAGGTGAATGGTCGAATCTTTTTGCAAGTTGTAATCAGAG 60648 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||| | | | || |||||||||||||| || |||| || || ||||||||||| || Sbjct 60649 ATTGTTCTTCCATCCTCCAATTGTTTGCCAGCGTAAATTAAACGTTGTTGATCGGCTGGA 60708 Query 43003 ACACCTTCTTTTTC-GCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | || ||||| || || | ||| || || | ||| | |||| | ||| || Sbjct 60709 ATTCCCTCTTTATCAGCAATTTTGCTC-TTCACATTCTCAATCGAGTCGTTGGACTCTAC 60767 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | || ||||||||||| |||| ||||||||||| | ||||||| Sbjct 60768 TTCCAATGTGATAGTTTTTCCAGTTAAGGTTTTCACAAACAATTGCATT 60816 Score = 98.7 bits (108), Expect = 8e-16 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || | || |||||| |||||||| | || |||||||| || ||||| || || Sbjct 60817 CCACCTCTCAATCTTAAGACCAAATGAAGGGTAGCATCCTTTTGAACGTTGTAGTCAGAG 60876 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||| | | | || |||||||| ||||| ||| | ||||| ||||||||||| || || Sbjct 60877 AGTGTTCTTCCATCCTCCAATTGCTTGCCTGCATAGATCAAACGCTGTTGATCAGCTGGA 60936 Query 43003 ACACCTTCTTTTTCGCTGA-TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | ||||| || || ||| | ||| || || | ||| | ||| || ||| || Sbjct 60937 ATTCCTTCCTTATCTGTGATTTTGCTC-TTCACATTCTCAATCGAGTCATTAGACTCAAC 60995 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112 || | || |||||| | || || || ||||| ||||| | |||||| || Sbjct 60996 CTCCAATGTGATAGTTCTACCAGTGAGTGTTTTGACAAATAGTTGCATGTT 61046 >seq42 Length=292872 Score = 113 bits (124), Expect = 3e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || | || ||| || ||||| |||| |||| |||||||| | ||||| |||||| Sbjct 165710 CCACCTCTCAATCTCAAGACCAAGTGGAGAGTGGATTCCTTTTGGATGTTGTAGTCGGAC 165651 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || | | |||| ||||||||||| || ||||||||||| || |||||||| | || Sbjct 165650 AAGGTTCTTCCGTCTTCCAATTGTTTACCAGCAAAAATCAAACGTTGTTGATCAGGTGGA 165591 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||| || || |||| ||| || | ||| |||||| | ||||| Sbjct 165590 ATTCCTTCCTTGTCTTGGATCTTGCTTTTCACGTTCTCAATCGTGTCGTTGGATTCGACT 165531 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112 || | || ||||| || || || || || || || || |||||||| || Sbjct 165530 TCGAGAGTGATAGTCTTACCAGTGAGGGTCTTGACGAAGATTTGCATCTT 165481 >seq38 Length=237352 Score = 109 bits (120), Expect = 4e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| | ||| |||||||| || | ||| |||||||| ||||||||||| || Sbjct 109293 CCACCACGTAATCTCAACACCAAGTGAAGAGTAGCATCCTTTTGTACATTGTAATCCGAT 109352 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || | | | || || |||||||| || ||| ||||||| || |||||||| || || Sbjct 109353 AAAGTTCTTCCATCCTCTAATTGTTTTCCAGCATAAATCAAACGTTGTTGATCAGCTGGA 109412 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||| || || |||| || ||| || | ||| | ||| | ||| || Sbjct 109413 ATGCCTTCCTTATCTGTGATTTTCTGTTTAACATTCTCAATCGAGTCATTGGACTCAACA 109472 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112 || | || || ||| | || || || ||||| || || | ||||||||| Sbjct 109473 TCCAATGTGATTGTTCTACCTGTAAGTGTTTTAACGAATAATTGCATTTT 109522 >seq26 Length=133099 Score = 104 bits (114), Expect = 2e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| | || ||| ||||||||||| | || ||||| || || ||||||| ||| Sbjct 73288 CCTCCCCTCAATCTCAACACCAAATGCAAGGTAGAATCCTTCTGAACGCTGTAATCAGAC 73229 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || | | | || || |||||||| || || ||||||||||| ||||||||||| || Sbjct 73228 AAGGTTCTTCCATCCTCTAATTGTTTTCCTGCGAAAATCAATCGTTGTTGATCGGCTGGA 73169 Query 43003 ACACCTTCTTTTTC-GCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | ||||| || || ||| | ||| ||||| | | | | ||| | ||| || Sbjct 73168 ATCCCTTCCTTATCGGCTATTTTGCTC-TTGACGTTCTCGATCGAGTCATTGGACTCTAC 73110 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112 || | || || || || || || | ||||||||||| |||||||| || Sbjct 73109 TTCCAAGGTAATGGTCTTACCAGTCAAGGTTTTCACAAAGATTTGCATGTT 73059 >seq151 Length=76492 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 42894 TCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTC 42953 ||| |||| ||| || | ||| |||||||| ||||| ||||| || || || | | | Sbjct 51024 TCTCAACATCAAGTGAAGAGTTGCATCCTTTTGTACATTATAATCCGATAAAGTTCTTCC 50965 Query 42954 GTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTT 43013 || |||||||| || || ||| ||||||| ||||||||||| || || | |||||| || Sbjct 50964 ATCCTCCAATTGCTTACCAGCATAAATCAAACGCTGTTGATCCGCTGGAATACCTTCCTT 50905 Query 43014 TTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTAT 43073 || ||| || ||| || | ||| || ||| | ||| || || | || || Sbjct 50904 ATCTGTGACTTTCTGTTTAACATTCTCAATTGAGTCATTGGACTCAACATCCAATGTGAT 50845 Query 43074 AGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTTCTTAATTTT 43121 ||| | || || || || || ||||| | |||||| || || |||| Sbjct 50844 CGTTCTACCTGTAAGTGTCTTGACAAATAATTGCATGTTGTTTTTTTT 50797 >seq76 Length=223365 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || | || ||| || ||||| |||| |||| |||||||| | ||||| || ||| Sbjct 84288 CCACCTCTCAATCTCAAGACCAAGTGGAGAGTGGATTCCTTTTGAATGTTGTAGTCAGAC 84347 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 ||||| | | || |||||||| || || ||||||||||||| |||||||| | || Sbjct 84348 AATGTTCTGCCATCCTCCAATTGCTTACCAGCAAAAATCAATCTTTGTTGATCTGGAGGA 84407 Query 43003 ACACCTTCTTTTTC 43016 | |||||| || || Sbjct 84408 ATACCTTCCTTGTC 84421 >seq82 Length=211372 Score = 86.0 bits (94), Expect = 5e-12 Identities = 162/234 (69%), Gaps = 12/234 (5%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| | || ||| || ||||| || | || |||||||| | ||||| || ||| Sbjct 147706 CCTCCTCTCAATCTCAAGACCAAGTGCAATGTAGATTCCTTTTGAATGTTGTAGTCAGAC 147765 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || | | || |||||||| || |||||||| ||||||| |||||||| | || Sbjct 147766 AAGGTTCTGCCATCTTCCAATTGCTTTCCGGCAAAGATCAATCTTTGTTGATCTGGAGGA 147825 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAA-CT-----GTGTCGCCAGCC 43056 | |||||| || || | || ||||||||| || || || |||||| | Sbjct 147826 ATACCTTCCTTGTCT----TGAA-TCTTTGACT-TGACATTCTCGATGGTGTCGTTGGAT 147879 Query 43057 TCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 ||||| || | || || || || ||||| | || || || |||||||||||| Sbjct 147880 TCGACCTCCAAAGTGATGGTCTTACCGGTCAAGGTCTTAACGAAAATTTGCATT 147933 >seq29 Length=427163 Score = 82.4 bits (90), Expect = 6e-11 Identities = 137/195 (70%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 |||||||| | ||||||||||| | || | | || |||||||| || || || ||| Sbjct 49239 TCCTTTTGGATGTTGTAATCGGAAAGGGTTCTGCCATCTTCCAATTGCTTACCAGCGAAA 49180 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCT---TTGACT 43035 ||||| || |||||||| | || | || || || || ||| | || | ||||| Sbjct 49179 ATCAAACGTTGTTGATCTGGTGGAATCCCCTCCTTATC-TTGA--ATCTTTGACTTGACG 49123 Query 43036 CTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTC 43095 | | | ||||||| || || || || | || || || ||||| || | ||||||| Sbjct 49122 TTCTCGATTGTGTCGTTAGATTCAACTTCCAAAGTGATGGTCTTTCCTGTCAAAGTTTTC 49063 Query 43096 ACAAAAATTTGCATT 43110 || |||||||||||| Sbjct 49062 ACGAAAATTTGCATT 49048 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381366932081292