Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq36 187 3e-42 seq93 181 1e-40 >seq36 Length=122865 Score = 187 bits (206), Expect = 3e-42 Identities = 814/1273 (64%), Gaps = 20/1273 (2%) Strand=Plus/Plus Query 71376 TCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGC 71435 |||| ||| || || || ||||||||| | | ||| | ||||||||| || ||||| Sbjct 115109 TCCTTGATAGGTCTCATAAGGTCCTTCTGTCTTGGCAACTTCACAACTGGCTGTCAATGC 115168 Query 71436 TCCATAATAAATGGTTTCGAAAATCTTCTT-ATTGAGA-TCTTGTGCTTCCGGGCTATCA 71493 || |||| || ||||||||||| |||| ||| | | ||||| ||||| || || Sbjct 115169 AGCAAAATATATTGTTTCGAAAAT-TTCTCGATTCAAAATCTTG-GCTTCTTCACTCTCG 115226 Query 71494 AATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGT 71553 || ||| || | ||||| || || || ||||| ||||| || | ||| || || Sbjct 115227 AAGGGAAGATGCATCTTGATAAAGGCATCGGCCAATCCCTGAACACCCAAACCAATGGGA 115286 Query 71554 CTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATT 71613 | |||||| ||||| || |||||| || ||||||||||| | || || || Sbjct 115287 CGATGTCTCATATTACTCTTTCTAGCTTCCTCAACTGGATAATAATTCTTGTCAATGATC 115346 Query 71614 TTATTGAGATTTCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCTC 71673 || || | ||| || | |||||| | || | || | ||| | | Sbjct 115347 TTGTTCAAATTCTTGGTGGCAATTTTGACAATTTCAAACAATTGTTCATGATCGTAGGTA 115406 Query 71674 C----CATCTATTACAAACACGTTC-AAG-GCAACAGATGCCAGATTACAAACGGCTACC 71727 | | ||| | | | || || ||| |||| | ||||| ||||| || ||||| Sbjct 115407 CGTGTCGTCTCATTGACATACTTTGGAAGTGCAATACTTGCCAAGTTACACACAGCTACT 115466 Query 71728 TCATTAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCT 71787 |||| | | | | |||| ||||||||||| || | || | ||||| ||||| Sbjct 115467 TCATCTGGAGCTGTGTATTCAATAATTTCAGTACACAAGTTGGAGGATTTGATCGTTCCA 115526 Query 71788 AAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCA 71847 | |||||||||||| ||| | ||||| |||||||||||||| || | ||| |||| Sbjct 115527 AGATTTTGTTGATTTGATTTTCTATTACATGCATCCTTATAAAGCATGTAAGGAACACCA 115586 Query 71848 GTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATA-TTCTT 71906 || ||||| || | || ||||| || ||| | || |||| | | | | | Sbjct 115587 GTCTCAATTTGTGCCTCAATAATTGCAAACCAAAGCTCTTGAGCACGAACGACACGGCGT 115646 Query 71907 GTATCTCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATT 71966 | | | | || | || || | ||| ||| | ||||| || ||||| ||| Sbjct 115647 GCACGACCCTCCT-TCTCATAACGCAAATACAATTCATTAAACTCTTCACCCCACACATC 115705 Query 71967 GTCTAATCCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCG 72026 | | ||||||| |||||| ||||| | | |||||| | ||| || || |||| Sbjct 115706 AGCAAGTCCAGGAGCTTCATTAGGACAAAAGAGTGACCAATGAGAATCCTCCTTCACTCT 115765 Query 72027 TTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTC 72086 | |||||| | |||| | ||| | | | | ||| | ||||| | || | ||||| Sbjct 115766 CTCCATAAACAAATCATTCACCCACAAACCCAAAAACAAATCTCGAGCTCGAATTTCCTC 115825 Query 72087 GTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAA 72146 ||||| ||||||||| | | ||| | || | | |||||| |||||||| || ||||| Sbjct 115826 CTTTCCAGTATTCTTTCTCAAATCTAAAAAATCAAAAATATCGGAATGCCAAGGCTCCAA 115885 Query 72147 GTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTT 72206 || | ||| | |||| ||||| || || ||||| | ||| | || |||| Sbjct 115886 ATAAACGGCAAAGGCTCCTTTTCGTTTACCACCACCTTGATCCACGTAACGGGCAGTGTC 115945 Query 72207 ATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATA 72266 || | || | | ||| ||||| | |||||||| | || ||||| || || || Sbjct 115946 GTTGAATACACGAAGCATGGGAATGAGTCCATTGGAGGTTCCGTTGGTTCCTCGAATGTA 116005 Query 72267 GCTTCCACTGGCACGAATATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGAT 72326 | |||| ||||||||| || || || | || || || || || | || || || Sbjct 116006 GGATCCAGAGGCACGAATGTTATGAACGGACAAGCCGATACCACCAGCACTCTTGGATAT 116065 Query 72327 TAATGCGCATCGT-TTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAA 72385 || || || ||| || | ||||| || || || || ||| || ||||| | Sbjct 116066 CAAGGCACA-CGTCTTGAGTGTATCGTAAATACCTGAAATGGAATCGTCTTTCATGGCCA 116124 Query 72386 GTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAG 72445 || || || | |||||| || ||| || ||||| || | |||||||| | Sbjct 116125 CTAAGAAGCAAGAACTCATTTGAGGAGTGGGAGTACCAGCATTGAAGAGAGTAGGAGAGG 116184 Query 72446 CGTGCGTAAACCATTTTTCAG---ACAGTAGATTGTACGTCTCAATAGCTGATTCTATAT 72502 |||| | ||| | ||| |||| | ||| || |||||||| || |||| Sbjct 116185 CGTGGATGAAC---ATACCAGTGCTAAGTAATTCGTAGGTTTCAATAGCCTTCTCAATAT 116241 Query 72503 CCCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCT 72562 | | ||| || || | |||||||| ||||| || ||||||| ||| | || Sbjct 116242 CGGAACCATGAATGCCCAAACTCACACGCATGAACATGTGTTGAGGTCGTTCGGCAATAA 116301 Query 72563 TGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATG 72622 | | ||| | ||||||| | |||| | ||| ||||| ||||| || | | || Sbjct 116302 CATCTCCGAGTTTGAGCAAGTAGCTTCTTTCAAGAGTCTTAAAGCCAAAGTAATCGAATT 116361 Query 72623 AAAAGTCTCGTTC 72635 | | |||||||| Sbjct 116362 GATAATCTCGTTC 116374 >seq93 Length=103736 Score = 181 bits (200), Expect = 1e-40 Identities = 390/578 (67%), Gaps = 10/578 (2%) Strand=Plus/Plus Query 42086 CCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTT 42145 || ||||||| | ||| ||||| ||||| || || | ||| ||||| | || | ||| Sbjct 84888 CCTTCATCTCGAGAAATCAATTCATTGGAGAAGGTCAATCCAGGCATCAAACCTCTCTTC 84947 Query 42146 TTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAG 42205 || | |||||| || || || |||||| ||||||||| ||||| || |||||| Sbjct 84948 TTCATCCAAAAGATGGAACAGAAAGATCCACTAAAGAAGATACCTTCCACACAAGCAAAG 85007 Query 42206 GCAATAAGTCTCTCTCCATAACCGGCA-CTGTCATGTATCCACTTTTGAGCCCAATCGGC 42264 ||||| | || || || | | | | | || ||||| || ||||||| || Sbjct 85008 GCAATCAATCGTTCAGCAAACAAGTTATCCGAGTTG-ATCCATTTCAAAGCCCAACGAGC 85066 Query 42265 CTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACT 42324 |||||||| || | || | || || |||||||| |||||| | | |||| | | Sbjct 85067 CTTCTTTTGAACGGATGGAACAGTATCAATGGCATTGAAGAGACGATGTCTTTCTCTCGT 85126 Query 42325 ATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGC 42384 || |||| || || || || | | |||||| |||| |||||| || |||||||| Sbjct 85127 GTCCTTAATGTAGGTTTCAATTAGAGTTGAATACATCTCTGCATGAATATTCTCAATGGC 85186 Query 42385 CATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTC 42444 || || ||||| |||||||||||||| || | || || ||||| | |||| ||| Sbjct 85187 AATTTGGAATCCATAGAAACATCTGGCTTCAGGAATTTGAACTTCAGCCATAAATTGTTG 85246 Query 42445 AGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTAT 42504 | || || || ||||| || || || ||| ||||| || ||||| ||| || || Sbjct 85247 ACACAAGTTCTCATTCACAATACCATCGGAGGCAGCAAAGAAGGCCAAAACAGTCTTGAT 85306 Query 42505 AAAATATTTTTCGTCCGGTGTTAATTTATTCCAATCATTG----ATATCTTTAGATATAT 42560 || | || ||| | ||| || | |||| ||||| |||||| | | || Sbjct 85307 GAAGTGTTGTTCAT-TGGTATTGAGAGTTTCC---CATTGAGCAATATCTGTGTGGAGAT 85362 Query 42561 CTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCAGATATCAT 42620 | |||||||| | ||||| || ||||| ||||| || ||||| | ||| | | | Sbjct 85363 CCACTTCTTCAGCAGTCCAGAAAGATGCCATGGCCTTCTTGTACATCTCCCAAACCTTTT 85422 Query 42621 GATATTGAATTGGGAAAATAACAAATCTATTTGGATTT 42658 ||| || |||||||| | ||| || | || ||||||| Sbjct 85423 GATGTTCGATTGGGAAGAGAACGAAACGATGTGGATTT 85460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671134384576240