Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq42 116 4e-21 seq29 104 2e-17 >seq42 Length=292872 Score = 116 bits (128), Expect = 4e-21 Identities = 154/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 142972 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTC 143031 |||||| || || | ||| ||||||||||| ||||||||||| || || || ||| Sbjct 165924 CAAAACCAAGTGCAATGTTGATTCTTTTTGAATGTTGTAATCAGACAAGGTTCTTCCGTC 165865 Query 143032 TTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 143091 ||| | ||| || || ||| |||| || | ||| || || || || || ||||| ||||| Sbjct 165864 TTCTAATTGCTTTCCGGCAAAGATGAGTCTTTGTTGGTCTGGTGGAATTCCTTCCTTGTC 165805 Query 143092 GGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGT 143151 || ||| ||| | | ||| | || || ||| || || |||| ||| | || Sbjct 165804 TTGGATCTTTGATTTAACGTTTTCAATGGTATCATTGGACTCAACCTCAAGAGTAATGGT 165745 Query 143152 CTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 ||| |||||||| ||||| ||||| ||||||||| Sbjct 165744 CTTTCCGGTCAAGGTTTTAACGAAGATTTGCATA 165711 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| || | ||| || || || | || ||||| ||||| |||||||| ||| | Sbjct 165710 CCACCTCTCAATCTCAAGACCAAGTGGAGAGTGGATTCCTTTTGGATGTTGTAGTCGGAC 165651 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || |||||| | ||||||||||||| | |||| |||||| ||||| || || Sbjct 165650 AAGGTTCTTCCGTCTTCCAATTGTTTACCAGCAAAAATCAAACGTTGTTGATCAGGTGGA 165591 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| || || ||| | | || | |||||| ||| ||| ||| Sbjct 165590 ATTCCTTCCTTGTCTTGGATCTTGCTTTTCACGTTCTCAATCGTGTCGTTGGATTCGACT 165531 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | ||| | ||||| || || | || || ||||| |||||||| Sbjct 165530 TCGAGAGTGATAGTCTTACCAGTGAGGGTCTTGACGAAGATTTGCAT 165484 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||||| || | | ||| | || | ||| ||||| ||||| |||||||| ||| Sbjct 166166 CCTCCTCTCAATCTAAGAACAAGGTGCAATGTGGATTCCTTTTGAATGTTGTAGTCGGAG 166107 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || |||||| | ||||||||||||| | |||| |||||| ||||| || || Sbjct 166106 AGAGTTCTTCCGTCTTCCAATTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGTGGA 166047 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| || || ||| || || | | ||| | ||||| ||| ||| ||| Sbjct 166046 ATACCTTCCTTATCTTGAATCTTGCTCTTCACGTTTTCGATGGTGTCGTTGGATTCAACT 165987 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | ||| | ||||| || || | || || ||||| ||||||||| Sbjct 165986 TCCAAAGTAATTGTCTTACCAGTGAGGGTCTTGACGAAGATTTGCATA 165939 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| | || | |||||| | |||| ||||| |||||||| |||||||||||| Sbjct 166394 CCTCCCCTCAATCTCAAAACAAGGTGAAGAGTAGACTCTTTTTGAATGTTGTAATCGGAG 166335 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || ||||| | ||| |||||||| | |||| | ||| || || ||||| Sbjct 166334 AGGGTTCTTCCATCTTCCAATTGCTTACCAGCGAAAATCAATCTTTGTTGGTCTGGAGGA 166275 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 |||||||| || || || ||| || | | || | || || ||| ||| ||| Sbjct 166274 ATGCCTTCCTTATCTTGGATCTTTGACTTGACATTCTCGATGGTATCATTGGATTCGACT 166215 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | |||||||| ||||| ||||| || || |||||||| Sbjct 166214 TCCAATGTAATGGTCTTGCCAGTCAAAGTTTTAACAAAGATTTGCAT 166168 >seq29 Length=427163 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| ||| | || ||| | |||| || ||||| ||||| |||||||||||| Sbjct 49275 CCACCTCTTAATCTCAGAACAAGGTGAAGAGTTGATTCCTTTTGGATGTTGTAATCGGAA 49216 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || ||||| | ||| |||||||| | |||| |||||| ||||| || || Sbjct 49215 AGGGTTCTGCCATCTTCCAATTGCTTACCAGCGAAAATCAAACGTTGTTGATCTGGTGGA 49156 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || || || || || ||| ||| || | | || | ||||| | | ||| ||| Sbjct 49155 ATCCCCTCCTTATCTTGAATCTTTGACTTGACGTTCTCGATTGTGTCGTTAGATTCAACT 49096 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | ||| | ||||| || ||||| ||||| ||||| |||||||| Sbjct 49095 TCCAAAGTGATGGTCTTTCCTGTCAAAGTTTTCACGAAAATTTGCAT 49049 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507010762171680