Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= NC_004615.1 Length=43604 Score E Sequences producing significant alignments: (Bits) Value seq554 814 0.0 >seq554 Length=1012 Score = 814 bits (902), Expect = 0.0 Identities = 509/541 (94%), Gaps = 5/541 (1%) Strand=Plus/Plus Query 42495 AGGCAGGTACTACGGTACTTGCCTAtttttttATGCAAATTTTAAAAAACACTTTACTAA 42554 ||||||||||| ||||||||||||||||||||||||||||| |||||||||| ||| Sbjct 474 AGGCAGGTACTTCGGTACTTGCCTATTTTTTTATGCAAATTA-AAAAAACACTCGCTTAA 532 Query 42555 TAAACATTTGTTTAGTATAATTATATTTGTAGGTTAGTTGATGACTTACAAATTATGTGT 42614 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 533 TAAACACTTGTTTAGTATAATTATATTTGTAGGTTAGTTGATGACTTACAAATTATGTGT 592 Query 42615 AAGGAGGTGAAAAGCCTCATGCTAGACATAATAAAAACACTTCTAGAACATCAAGTATTG 42674 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 593 AAGGAGGTGAAAAGCCTCATGCTAGACATAATAAAAACACTTCTAGAACATCAAGTATTG 652 Query 42675 GCAGTACTGATAATTCCAGAAGTGTTAAAACAACTTAGAGAATGGCATCTCGGCTACCTA 42734 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 653 GCAGTACTGATAATTCCAGAAGTGTTAAAACAACTTAGAGAATGGCATCTCGGCTACCTA 712 Query 42735 GACCGAAAGCCAAACAACAAAGATTAACATTATGCTTGGAGCCTGATGGCTCCTCCTTAC 42794 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 713 GACCGAAAGCCAAACAACAAAGATTAACATTATGCTTGGAGCCTGATGGCTCCTCCTTAC 772 Query 42795 ACTTATATAATATAATATTATTTGGAGGTTTTCAATTATGACAGAACAAATGTATTTAAT 42854 ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| Sbjct 773 ACTTATATAATATAATATTATTTCGAGATTTTCAATTATGACAGAACAAATGTATTTAAT 832 Query 42855 ATTGTTTTTATTAAGCCTACCATTGTTATTATTTATCGGGAGAAAGACACATTTTTATTG 42914 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 833 ATTGTTTTTATTAAGCCTACCATTGTTATTATTTATCGGGAGAAAAACACATTTTTATTG 892 Query 42915 TTTAGATAAAAAGAATGGACGTAGATAATATGAG-TGATTATAAATTAAAAATAATTGAA 42973 |||||||||||||||||||||||| | || | ||| |||||| ||||| ||| | Sbjct 893 TTTAGATAAAAAGAATGGACGTAGTTTCGCTGGGAAAATTTTAAATT-TAAATACTTGGA 951 Query 42974 TTGATCAAAAGTGAT-ATAACA-GGTTACCAAATTCACAAACAAACTGGCGTAGCGCAAT 43031 || ||||||| |||| || || ||||| ||||||||||||||||||||||||||||||| Sbjct 952 TTTATCAAAAATGATCGTAGCATGGTTAGCAAATTCACAAACAAACTGGCGTAGCGCAAT 1011 Query 43032 A 43032 | Sbjct 1012 A 1012 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 139410249738408