Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq42 114 8e-21 seq82 104 1e-17 seq151 102 5e-17 seq29 86.0 4e-12 >seq42 Length=292872 Score = 114 bits (126), Expect = 8e-21 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| ||||| | | ||| ||||| |||||||| || |||||||| || ||||||||||| Sbjct 165939 ACCACCTCTGAGTCTCAAAACCAAGTGCAATGTTGATTCTTTTTGAATGTTGTAATCAGA 165880 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 ||| | | ||| || ||||||||||| ||| || | | ||| ||||| | || Sbjct 165879 CAAGGTTCTTCCGTCTTCTAATTGCTTTCCGGCAAAGATGAGTCTTTGTTGGTCTGGTGG 165820 Query 33262 TATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAAC 33321 || ||||| || || ||| ||| || ||| ||| || || |||| | ||| Sbjct 165819 AATTCCTTCCTTGTCTTGGATCTTTGATTTAACGTTTTCAATGGTATCATTGGACTCAAC 165760 Query 33322 GTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || ||||| || || ||||| || | ||||| ||||| |||||||| Sbjct 165759 CTCAAGAGTAATGGTCTTTCCGGTCAAGGTTTTAACGAAGATTTGCAT 165712 Score = 105 bits (116), Expect = 4e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| ||||| || | ||| ||||| || | || || || ||||| || ||||| || || Sbjct 165711 ACCACCTCTCAATCTCAAGACCAAGTGGAGAGTGGATTCCTTTTGGATGTTGTAGTCGGA 165652 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 ||| | | ||| |||||||| || ||| ||| || |||||||| || || | || Sbjct 165651 CAAGGTTCTTCCGTCTTCCAATTGTTTACCAGCAAAAATCAAACGTTGTTGATCAGGTGG 165592 Query 33262 TATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAAC 33321 || ||||| || || ||| ||| || | | |||||||||||||| || || Sbjct 165591 AATTCCTTCCTTGTCTTGGATCTTGCTTTTCACGTTCTCAATCGTGTCGTTGGATTCGAC 165532 Query 33322 GTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372 || ||||| || || || || || || || || ||||| |||||||| || Sbjct 165531 TTCGAGAGTGATAGTCTTACCAGTGAGGGTCTTGACGAAGATTTGCATCTT 165481 >seq82 Length=211372 Score = 104 bits (114), Expect = 1e-17 Identities = 167/239 (70%), Gaps = 1/239 (0%) Strand=Plus/Plus Query 33141 CACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAG 33200 |||| ||||| || | ||| ||||| |||||||| || || ||||| || ||||| |||| Sbjct 147704 CACCTCCTCTCAATCTCAAGACCAAGTGCAATGTAGATTCCTTTTGAATGTTGTAGTCAG 147763 Query 33201 ACAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGG 33260 |||| | || |||||||||||||| ||| || || | ||| || || | | Sbjct 147764 ACAAGGTTCTGCCATCTTCCAATTGCTTTCCGGCAAAGATCAATCTTTGTTGATCTGGAG 147823 Query 33261 GTATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAA 33320 | || ||||| || || |||| || || | | || |||||||||| || | Sbjct 147824 GAATACCTTCCTTGTCTTGAATCTTTGACTTGACATTCTCGATGGTGTCGTTGGATTCGA 147883 Query 33321 CGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCA-TGTTTATGGT 33378 | |||| ||| || || || || || | || || ||||||||||||| ||| ||||| Sbjct 147884 CCTCCAAAGTGATGGTCTTACCGGTCAAGGTCTTAACGAAAATTTGCATTGTGAATGGT 147942 >seq151 Length=76492 Score = 102 bits (112), Expect = 5e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| |||||||| | ||||| ||| || | || | || ||||||| ||| ||||| || Sbjct 51036 ACCACCTCTTAATCTCAACATCAAGTGAAGAGTTGCATCCTTTTGTACATTATAATCCGA 50977 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 ||| | | || ||||||||||| ||| | | || ||||| || || |||| || Sbjct 50976 TAAAGTTCTTCCATCCTCCAATTGCTTACCAGCATAAATCAAACGCTGTTGATCCGCTGG 50917 Query 33262 TATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAAC 33321 || ||||| || || | | |||||| || | | ||| | ||| |||| | ||| Sbjct 50916 AATACCTTCCTTATCTGTGACTTTCTGTTTAACATTCTCAATTGAGTCATTGGACTCAAC 50857 Query 33322 GTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372 |||| || |||||| | || ||||| || || || || | ||||||||| Sbjct 50856 ATCCAATGTGATCGTTCTACCTGTAAGTGTCTTGACAAATAATTGCATGTT 50806 >seq29 Length=427163 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| |||||||| | || || | || | || || || ||||| || |||||||| || Sbjct 49276 ACCACCTCTTAATCTCAGAACAAGGTGAAGAGTTGATTCCTTTTGGATGTTGTAATCGGA 49217 Query 33202 CAAATTGAGTTGG--TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTG 33259 || | || || ||||||||||| ||| || || |||||||| || || | Sbjct 49216 --AAGGGTTCTGCCATCTTCCAATTGCTTACCAGCGAAAATCAAACGTTGTTGATCTGGT 49159 Query 33260 GGTATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGA 33319 || || || || || || |||| || || | | || |||||||| | || | Sbjct 49158 GGAATCCCCTCCTTATCTTGAATCTTTGACTTGACGTTCTCGATTGTGTCGTTAGATTCA 49099 Query 33320 ACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || |||| ||| || || ||||| || | |||||| |||||||||||||| Sbjct 49098 ACTTCCAAAGTGATGGTCTTTCCTGTCAAAGTTTTCACGAAAATTTGCAT 49049 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318775369951452