Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq42 89.7 4e-13 seq82 87.8 1e-12 seq26 86.0 4e-12 seq38 82.4 5e-11 >seq42 Length=292872 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 43893 AACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGT 43952 ||||||| |||||||| || || | || || || |||||||||||| || |||||| Sbjct 166396 AACCTCCCCTCAATCTCAAAACAAGGTGAAGAGTAGACTCTTTTTGAATGTTGTAATCGG 166337 Query 43953 TTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAG 44012 | | |||| |||||||| || || || || ||||| | ||| ||||| ||| Sbjct 166336 AGAGGGTTCTTCCATCTTCCAATTGCTTACCAGCGAAAATCAATCTTTGTTGGTCTGGAG 166277 Query 44013 GTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCA 44072 | | ||||| |||||| || ||| ||||| | | | ||||| | || | Sbjct 166276 GAATGCCTTCCTTATCTTGGATCTTTGACTTGACATTCTCGATGGTATCATTGGATTCGA 166217 Query 44073 CATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 | || | ||||| || || || || ||||| || ||||| |||||||| Sbjct 166216 CTTCCAATGTAATGGTCTTGCCAGTCAAAGTTTTAACAAAGATTTGCAT 166168 >seq82 Length=211372 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||||||||||||||| || ||||| || | || || |||||||| || || || Sbjct 147705 ACCTCCTCTCAATCTCAAGACCAAGTGCAATGTAGATTCCTTTTGAATGTTGTAGTCAGA 147764 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 || | |||| |||||||| ||||| ||||| ||||| | ||| || || |||| Sbjct 147765 CAAGGTTCTGCCATCTTCCAATTGCTTTCCGGCAAAGATCAATCTTTGTTGATCTGGAGG 147824 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | |||||| || ||| ||| ||| ||||| | | | || || | || || Sbjct 147825 AATACCTTCCTTGTCTTGAATCTTTGACTTGACATTCTCGATGGTGTCGTTGGATTCGAC 147884 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || || || |||||||| || ||||| || || |||||||| Sbjct 147885 CTCCAAAGTGATGGTCTTACCGGTCAAGGTCTTAACGAAAATTTGCAT 147932 >seq26 Length=133099 Score = 86.0 bits (94), Expect = 4e-12 Identities = 163/240 (68%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 43893 AACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGT 43952 ||||||| |||||||| ||||||||||| | || || || |||| | ||||| Sbjct 73290 AACCTCCCCTCAATCTCAACACCAAATGCAAGGTAGAATCCTTCTGAACGCTGTAATCAG 73231 Query 43953 TTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAG 44012 || | |||| || |||||||||||||| || ||||| ||||| || || | Sbjct 73230 ACAAGGTTCTTCCATCCTCTAATTGTTTTCCTGCGAAAATCAATCGTTGTTGATCGGCTG 73171 Query 44013 GTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCA 44072 | | ||||| ||||| | ||||| ||||| | | | | || | ||| | Sbjct 73170 GAATCCCTTCCTTATCGGCTATTTTGCTCTTGACGTTCTCGATCGAGTCATTGGACTCTA 73111 Query 44073 CATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATGTCGAGTCTTT 44132 | || | ||||| || ||||| || || || |||||||| |||||||||| || | ||| Sbjct 73110 CTTCCAAGGTAATGGTCTTACCAGTCAAGGTTTTCACAAAGATTTGCATGTTGAATGTTT 73051 >seq38 Length=237352 Score = 82.4 bits (90), Expect = 5e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 43904 AATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGC 43963 ||||| |||||||| || || || || ||||| | ||| ||||| ||| | Sbjct 109302 AATCTCAACACCAAGTGAAGAGTAGCATCCTTTTGTACATTGTAATCCGATAAAGTTCTT 109361 Query 43964 TCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCT 44023 |||| || ||||||||||| ||| | ||||| ||||| || || || | ||||| Sbjct 109362 CCATCCTCTAATTGTTTTCCAGCATAAATCAAACGTTGTTGATCAGCTGGAATGCCTTCC 109421 Query 44024 TTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTA 44083 ||||||| ||||| ||||| || | ||| | || | ||| ||||| | || Sbjct 109422 TTATCTGTGATTTTCTGTTTAACATTCTCAATCGAGTCATTGGACTCAACATCCAATGTG 109481 Query 44084 ATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 |||||| |||| || | || || || |||| |||||| Sbjct 109482 ATTGTTCTACCTGTAAGTGTTTTAACGAATAATTGCAT 109519 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354775118108952