Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq120 104 2e-17 seq82 96.9 3e-15 seq38 91.5 1e-13 >seq120 Length=320511 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039 ||||||| || | |||||||| | || | || || |||||||| | ||||||||| Sbjct 60587 TTCCTCCACGAAGTCTCAACACAAGGTGAATGGTCGAATCTTTTTGCAAGTTGTAATCAG 60646 Query 20040 CCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099 || ||| | ||| |||||||||||||| || ||||| | | ||||||||| | | Sbjct 60647 AGATTGTTCTTCCATCCTCCAATTGTTTGCCAGCGTAAATTAAACGTTGTTGATCGGCTG 60706 Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159 | | || ||||| || |||||||| ||||| | ||| || ||| | || Sbjct 60707 GAATTCCCTCTTTATCAGCAATTTTGCTCTTCACATTCTCAATCGAGTCGTTGGACTCTA 60766 Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 ||||| || || ||||| || || || ||||| ||||| | ||||||| Sbjct 60767 CTTCCAATGTGATAGTTTTTCCAGTTAAGGTTTTCACAAACAATTGCATT 60816 >seq82 Length=211372 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 ||||||| || ||||| ||||| || | ||||||||| ||||| |||||||| || | Sbjct 147706 CCTCCTCTCAATCTCAAGACCAAGTGCAATGTAGATTCCTTTTGAATGTTGTAGTCAGAC 147765 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | ||| | |||||||||||| || || ||| | || | || |||||||| || Sbjct 147766 AAGGTTCTGCCATCTTCCAATTGCTTTCCGGCAAAGATCAATCTTTGTTGATCTGGAGGA 147825 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | ||||| ||||| ||| ||| || || | | | | ||| | ||| Sbjct 147826 ATACCTTCCTTGTCTTGAATCTTTGACTTGACATTCTCGATGGTGTCGTTGGATTCGACC 147885 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 |||| || ||||| || |||||||| || || || |||||||||||| Sbjct 147886 TCCAAAGTGATGGTCTTACCGGTCAAGGTCTTAACGAAAATTTGCATT 147933 >seq38 Length=237352 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || || ||||| ||||||||||| || || |||| || ||||||| |||||||| Sbjct 109293 CCACCACGTAATCTCAACACCAAGTGAAGAGTAGCATCCTTTTGTACATTGTAATCCGAT 109352 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | |||| | ||| || |||||||| || |||||||| | | |||||||| | || Sbjct 109353 AAAGTTCTTCCATCCTCTAATTGTTTTCCAGCATAAATCAAACGTTGTTGATCAGCTGGA 109412 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | |||||| || || | ||||| ||||| || | ||| || || | || Sbjct 109413 ATGCCTTCCTTATCTGTGATTTTCTGTTTAACATTCTCAATCGAGTCATTGGACTCAACA 109472 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATTTT 20211 |||| || || ||| | || || | ||||| || || | ||||||||| Sbjct 109473 TCCAATGTGATTGTTCTACCTGTAAGTGTTTTAACGAATAATTGCATTTT 109522 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419584264725294