Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq42 170 4e-37 seq82 143 6e-29 seq29 141 2e-28 seq93 131 4e-25 seq120 113 1e-19 seq38 111 4e-19 seq76 105 2e-17 seq26 100 7e-16 >seq42 Length=292872 Score = 170 bits (188), Expect = 4e-37 Identities = 178/231 (77%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| ||||| | ||||| || || || ||||| ||||| || ||||| || ||||| Sbjct 166169 ATTCCTCCTCTCAATCTAAGAACAAGGTGCAATGTGGATTCCTTTTGAATGTTGTAGTCG 166110 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || |||||||| |||||||| | |||||| ||||||||||| | | |||||||| || Sbjct 166109 GAGAGAGTTCTTCCGTCTTCCAATTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGT 166050 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTT-ACATTTTCTACGGTATCGCTAGGTTC 104508 || || ||||| ||||| |||||||| ||| || || ||||| | ||| ||| | | ||| Sbjct 166049 GGAATACCTTCCTTATCTTGAATCTT-GCTCTTCACGTTTTCGATGGTGTCGTTGGATTC 165991 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || | ||||| ||||||||||| || || || || || || ||||| Sbjct 165990 AACTTCCAAAGTAATTGTCTTACCAGTGAGGGTCTTGACGAAGATTTGCAT 165940 Score = 141 bits (156), Expect = 2e-28 Identities = 172/230 (75%), Gaps = 7/230 (3%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||| || || || || ||||| || | ||||| |||||||| | |||||| ||| Sbjct 165680 GTGGATTCCTTTTGGATGTTGTAGTCGGACAAGGTTCTTCCGTCTTCCAATTGTTTACCA 165621 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||||||| | | ||||||||||| || |||||||| || || || ||||| |||||| Sbjct 165620 GCAAAAATCAAACGTTGTTGATCAGGTGGAATTCCTTCCTTGTCTTGGATCTT-GCTTTT 165562 Query 104483 -ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 || || || | || ||| | | ||| || || || || |||||||||||||| || || Sbjct 165561 CACGTTCTCAATCGTGTCGTTGGATTCGACTTCGAGAGTGATAGTCTTACCAGTGAGGGT 165502 Query 104542 TTTTACAAATATCTGCATTTTGT----GTACAGTATTTATTAGAGTAATA 104587 || || || || ||||| |||| ||| | |||| |||| |||| || Sbjct 165501 CTTGACGAAGATTTGCATCTTGTAGCAGTAGA-TATTAATTACAGTAGTA 165453 >seq82 Length=211372 Score = 143 bits (158), Expect = 6e-29 Identities = 156/207 (75%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416 || ||||||||||| || ||||| || |||||||| | ||||| || ||||| | ||| Sbjct 147730 TGCAATGTAGATTCCTTTTGAATGTTGTAGTCAGACAAGGTTCTGCCATCTTCCAATTGC 147789 Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 ||||| ||||| || | || |||||||| ||||| || ||||| || || ||||||||| Sbjct 147790 TTTCCGGCAAAGATCAATCTTTGTTGATCTGGAGGAATACCTTCCTTGTCTTGAATCTTT 147849 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 | || ||||| || | ||| ||| | | ||| ||||| | || || |||||||| || Sbjct 147850 GACTTGACATTCTCGATGGTGTCGTTGGATTCGACCTCCAAAGTGATGGTCTTACCGGTC 147909 Query 104537 AGTGTTTTTACAAATATCTGCATTTTG 104563 | || || || || || |||||| || Sbjct 147910 AAGGTCTTAACGAAAATTTGCATTGTG 147936 >seq29 Length=427163 Score = 141 bits (156), Expect = 2e-28 Identities = 174/235 (74%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || || || || || || | || ||||| || ||||| || ||||| Sbjct 48784 ATACCACCTCTGAGTCTGAGGACAAGGTGGAGAGTGGATTCCTTTTGAATGTTGTAGTCG 48725 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || | ||||| || ||||||| ||| ||||| ||||| || || || ||||||||||| Sbjct 48724 GACAAGGTTCTTCCATCTTCTAATTGCTTTCCGGCAAAGATGAGTCTTTGTTGATCAGGT 48665 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTT-ACATTTTCTACGGTATCGCTAGGTTC 104508 || |||||||| || || || ||| |||||||| || || || | || ||| | | ||| Sbjct 48664 GGAATTCCTTCCTTGTCTTGGATC-TTGCTTTTCACGTTCTCGATTGTGTCGTTGGATTC 48606 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || || || || |||||||| ||||| | || || || || || ||||| ||| Sbjct 48605 GACTTCAAGAGTGATAGTCTTGCCAGTTAAAGTCTTGACGAAGATTTGCATGTTG 48551 >seq93 Length=103736 Score = 131 bits (144), Expect = 4e-25 Identities = 261/379 (69%), Gaps = 26/379 (7%) Strand=Plus/Minus Query 268919 GAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATT 268978 || || || |||||||||||||||||||| || |||||||| || || || || |||||| Sbjct 85231 GAAGTTCAAATTCCTGAAGCCAGATGTTTCTATGGATTCCAAATTGCCATTGAGAATATT 85172 Query 268979 CATTCAGAGATGTA--CAGTCTATTAATAGATACTTATATAGATGATAACAACGAAAAGA 269036 ||| |||||||||| || || |||| || || || || | || |||| | Sbjct 85171 CATGCAGAGATGTATTCA-ACT-CTAATTGAAACCTACATTAAGGA----CACGAGA--G 85120 Query 269037 AAAGAC-TATTTTCTTCTATGAGAACTATGGACTGT-------GTGAGaaaaaaaTCTGA 269088 |||||| | | ||||| ||| | || ||||| || ||| || || Sbjct 85119 AAAGACATCGTCTCTTCAATGCCATTGAT--ACTGTTCCATCCGTTCAAAAGAAGGCTCG 85062 Query 269089 ATGGGCTCTGAAATGGATAAAC---GATAGCGCGCCTTACGGAGAAAGGTTAGTTGCTTT 269145 |||||| |||||||||| ||| |||| | | | | ||| | || |||| || Sbjct 85061 TTGGGCTTTGAAATGGATCAACTCGGATAACTTG---TTTGCTGAACGATTGATTGCCTT 85005 Query 269146 TGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAA 269205 ||| ||| |||||||| |||||| || ||||| | ||||||||| ||||||| Sbjct 85004 TGCTTGTGTGGAAGGTATCTTCTTTAGTGGATCTTTCTGTTCCATCTTTTGGATGAAGAA 84945 Query 269206 AAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTT 269265 ||||| | ||||| ||||| || ||||| || |||||||| | || ||||| || Sbjct 84944 GAGAGGTTTGATGCCTGGATTGACCTTCTCCAATGAATTGATTTCTCGAGATGAAGGATT 84885 Query 269266 ACACTGCGACTTCGCTTGT 269284 |||| ||||| |||||| Sbjct 84884 ACACACGGACTTTGCTTGT 84866 >seq120 Length=320511 Score = 113 bits (124), Expect = 1e-19 Identities = 167/234 (71%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| ||||| | || | || | ||| | |||| || || |||| || |||||| Sbjct 60814 ATTCCACCTCTCAATCTTAAGACCAAATGAAGGGTAGCATCCTTTTGAACGTTGTAGTCA 60873 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || ||||| || || || | ||| || || ||| | || | | ||||||||||| Sbjct 60874 GAGAGTGTTCTTCCATCCTCCAATTGCTTGCCTGCATAGATCAAACGCTGTTGATCAGCT 60933 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCT-TTTACATTTTCTACGGTATCGCTAGGTTC 104508 || |||||||| |||| ||| |||||| || ||||| || | | || ||| || Sbjct 60934 GGAATTCCTTCCTTAT-CTGTGATTTTGCTCTTCACATTCTCAATCGAGTCATTAGACTC 60992 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 ||||| | ||| ||||| ||||||| |||||||| ||||||| ||||| || Sbjct 60993 AACCTCCAATGTGATAGTTCTACCAGTGAGTGTTTTGACAAATAGTTGCATGTT 61046 >seq38 Length=237352 Score = 111 bits (122), Expect = 4e-19 Identities = 149/205 (73%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 |||| || || || | ||| || || |||| |||||| || || |||| |||||||||| Sbjct 109323 GTAGCATCCTTTTGTACATTGTAATCCGATAAAGTTCTTCCATCCTCTAATTGTTTTCCA 109382 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC-CTGAATCTTTGCTTT 104481 ||| |||| | | |||||||||| || || ||||| ||||| ||| | | || ||| Sbjct 109383 GCATAAATCAAACGTTGTTGATCAGCTGGAATGCCTTCCTTATCTGTGATTTTCTG-TTT 109441 Query 104482 TACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 ||||| || | | || | | || || || | ||| || || |||| |||||||| Sbjct 109442 AACATTCTCAATCGAGTCATTGGACTCAACATCCAATGTGATTGTTCTACCTGTAAGTGT 109501 Query 104542 TTTTACAAATATCTGCATTTTGTGT 104566 ||| || |||| |||||||||||| Sbjct 109502 TTTAACGAATAATTGCATTTTGTGT 109526 >seq76 Length=223365 Score = 105 bits (116), Expect = 2e-17 Identities = 112/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||| || ||||| || |||||||| | ||||| || || || | ||| || ||| Sbjct 84318 GTGGATTCCTTTTGAATGTTGTAGTCAGACAATGTTCTGCCATCCTCCAATTGCTTACCA 84377 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||||||| | || |||||||| ||||| || ||||| || || || ||||||| || Sbjct 84378 GCAAAAATCAATCTTTGTTGATCTGGAGGAATACCTTCCTTGTCTTGGATCTTTGACTTC 84437 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTA 104510 ||||| || | ||| ||| ||| |||| Sbjct 84438 ACATTCTCGATGGTGTCGTTAGACTCTA 84465 >seq26 Length=133099 Score = 100 bits (110), Expect = 7e-16 Identities = 149/209 (71%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 104356 ATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTG 104415 ||| || ||||| || ||||||| | || ||||| | ||||| || || |||| ||| Sbjct 73265 ATGCAAGGTAGAATCCTTCTGAACGCTGTAATCAGACAAGGTTCTTCCATCCTCTAATTG 73206 Query 104416 TTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT 104475 |||||| || ||||| | | |||||||| | || || ||||| ||||| || || Sbjct 73205 TTTTCCTGCGAAAATCAATCGTTGTTGATCGGCTGGAATCCCTTCCTTATCGGCTAT-TT 73147 Query 104476 TGCTTTT-ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAG 104534 |||| || || || || | | || | | ||||| || | ||||| |||||||||| Sbjct 73146 TGCTCTTGACGTTCTCGATCGAGTCATTGGACTCTACTTCCAAGGTAATGGTCTTACCAG 73087 Query 104535 TAAGTGTTTTTACAAATATCTGCATTTTG 104563 | | ||||| ||||| || ||||| ||| Sbjct 73086 TCAAGGTTTTCACAAAGATTTGCATGTTG 73058 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151389932184392