Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq157 161 1e-34 >seq157 Length=153911 Score = 161 bits (178), Expect = 1e-34 Identities = 420/620 (68%), Gaps = 34/620 (5%) Strand=Plus/Minus Query 6700 GGATGAGGATTATAATCTAACAATTCAAAATCTTCAAATTTAAAATCA--CATAAATTAT 6757 |||||||| | ||||||| |||| ||||||||||||||||||||||| ||| | | Sbjct 125627 GGATGAGGTTCATAATCTTTCAATACAAAATCTTCAAATTTAAAATCATCCATTTCCT-T 125569 Query 6758 CAGACtttttttttAATATTACAACAGGTGAAGGTTTTATTGAT--CGAGTTAATTGTTC 6815 || | ||| |||| ||||| ||| || || ||| | ||||||| | Sbjct 125568 CACA-TTTGGATTTAGG--TACAATTTTGGAAAGTGTTTGGGATTTCTCTCTAATTGTAC 125512 Query 6816 TTTTATAGCTTTTATATGATCTAAATAAATATGAGCATCTCCTAGCGTATGAATAAATTC 6875 ||| | | || ||||||| |||| | |||| ||| || ||| | ||| || Sbjct 125511 TTTCAATGGTTCAATATGATTCGAATAGACATGACAATCACCACAACAATGTACAAAATC 125452 Query 6876 ACCTGGTTTCATATCAACAG-CTTGAGCAATTAAATATGTTAATAATGCATAAGAAGCTA 6934 ||||||||||| ||| ||| |||| || || | | | || ||||| ||||| || || | Sbjct 125451 ACCTGGTTTCA-ATCCACATACTTGTGCCATCATACAAGTCAATAAAGCATAGGATGCAA 125393 Query 6935 CATTAAAAGGTACACCTAATCCCATATCTGCTGATCTTTGATAACATTGACAAGATAAAA 6994 |||||||||||| ||||| |||||||| |||||||||||| ||||||| | || Sbjct 125392 TATTAAAAGGTACTCCTAAACCCATATCACATGATCTTTGATACATTTGACAA-CTCAAT 125334 Query 6995 TATTGTCTAT-AGCAT------AAAATTGACACAATACATGACATGGAGGTAAAACAGCC 7047 | |||| ||| | || | |||||||| |||| |||||| |||| || ||| Sbjct 125333 TCTTGTGTATCTGTATCCACCCAGAATTGACATAATAAATGACA---AGGTGGAAGTGCC 125277 Query 7048 ---TGATCTATATCAGATGGATTCCAAGCAGTCATTAAAATACGTCTATCATTTGGATTT 7104 ||| || ||| || |||||| |||| | | ||| | | || ||||| || Sbjct 125276 ATTTGAGGTAAATCTGAAACATTCCATGCAGAGAGAATAATTCTACGATTGGTTGGA-TT 125218 Query 7105 GTTTTTAATTTTGT-TATAATTATTTGTAATTGATCTATACCCTGACCTTCATAATTAGT 7163 || ||| | | | | ||| |||||||| ||||| | ||||||||| Sbjct 125217 GTGACGAATGGTATCGACACACTTTTTCAATTGATCAATACCTTTTTGAGAATAATTAGT 125158 Query 7164 ATGACAATTTATATAATTAGCTCCAAAATGTCTCCATTGAAACCCATAAATAGGACCTAA 7223 ||| || ||| | || || |||||||||||||||| ||||| | || ||||| Sbjct 125157 ATGCATGGTTTCATAGTGTGCACCCCAATGTCTCCATTGAAATCCATAGACTGGTCCTAA 125098 Query 7224 ATCACCTTCTTCACGATGATTAAATCCTAATCG-ATTTAAATTAGATT-TTGA--TCCAT 7279 ||| |||||||||||| | ||||| ||| | || ||||| ||| | || | ||| Sbjct 125097 ATCCATCTCTTCACGATGAGTCAATCC-AATGGAATCTAAAT---ATTGTCGACTTGCAT 125042 Query 7280 AAGCATCCCAAATATGTACA 7299 |||||||||| || ||| Sbjct 125041 TGCCATCCCAAATGTGAACA 125022 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595867724618400