Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq13 116 6e-21 >seq13 Length=365397 Score = 116 bits (128), Expect = 6e-21 Identities = 366/555 (66%), Gaps = 18/555 (3%) Strand=Plus/Minus Query 193646 TGAGATCTATAATCTTGGTGCTCAAAGTCATGTTAAAGTTTCCTTTGAGATGCCAGAGTA 193705 ||| || || ||| | | ||||||| |||||| ||||| ||||| ||||| || || Sbjct 116181 TGAAATTTACAATTTGGCTGCTCAATCTCATGTGAAAGTCAGTTTTGAAATGCCTGAATA 116122 Query 193706 TACTTCTAATGTTGATGCTTTAGGAACTCTTAGAATACTTGAAGCAGTTCGTATGTTGGG 193765 |||| |||||||||||| | | || ||| | | | | |||||| ||||| | || Sbjct 116121 TACTGCTAATGTTGATGGTATTGGTACTTTACGTTTGTTGGAAGCAATTCGTGCCTGTGG 116062 Query 193766 AATGGAGAAAGATGTTCGCA-TCTATCAGGCATCTACCAGCGAACTGTATGGTGGTGTTC 193824 | |||| ||||| | | | ||||| || ||| || ||| |||| ||| || | Sbjct 116061 ATTGGA-AAAGAAAACCAAATTTTATCAAGCCAGTACAAGTGAATTGTACGGTCTAGTGC 116003 Query 193825 TAGGCACTCCACTATCAGAAACCACACCATTTCATCCACGCTCTCCTTATG-GTGTAGCA 193883 || ||| | | ||||| |||||||| |||| || || || |||| ||| || Sbjct 116002 AAGAGGTTCCTCAAAAGGAAACAACACCATTCTATCCTCGTTCACCATATGCCTGT-GCC 115944 Query 193884 AAGTTGTATGGTTATTGGATCATCAAGAATTATCGTGAGTCATA----TGGATTCCACGC 193939 || ||||| | |||||||| | || ||| | || | || | || || Sbjct 115943 AAATTGTACAGCTATTGGATTGTTGTTAACTATAGAGAAGCTTACAACATGTTTGCA--- 115887 Query 193940 TAGTTCTGGTATTCTCTTCAATCACGAATCTCCAAGAAGAGGTGAGACATTTGTAACTCG 193999 | | ||||||| | ||||| |||||||| | | ||| |||||||| || | Sbjct 115886 TTG-AATGGTATTTTGTTCAACCACGAATCGATTCGTCGTGGTCCAACATTTGTGACCAG 115828 Query 194000 TAAGATTACACAAGG-TTTATCTAAGATCTCTGTTGGATTACAGAAGATTCTT--TATCT 194056 ||||| || || || | | | || |||| || | |||||| || ||| | Sbjct 115827 AAAGATCAC-CATGGCTGTTGCCCGTATAAAACTTGGTTTGC--AAGATTGTTTGTATTT 115771 Query 194057 TGGTAATCTTAATGCTAAGAGGGATTGGGGACACGCAAAGGATTATGTTGAAGCGATGTG 194116 ||||| | ||||| | || |||||||| || || ||||||||||||||||| ||||| Sbjct 115770 GGGTAACTTGGATGCTGAAAGAGATTGGGGTCATGCTAAGGATTATGTTGAAGCCATGTG 115711 Query 194117 GTTAATGTTGCAACAGGATGAACCCGATGATTATGTGATTGCTACAGGTGAACAGTATTC 194176 | | ||||| || || || |||| ||||| | | || || |||||| | || Sbjct 115710 GCTCATGTTACAGCAAGAGCAACCACGTGATTTTTGCGTGGCAACTGGTGAAAAACATAG 115651 Query 194177 TGTTAGAGACTTTGT 194191 || ||||| ||||| Sbjct 115650 CGTCAGAGAATTTGT 115636 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807549405791440