Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq36 214 2e-50 seq93 203 4e-47 >seq36 Length=122865 Score = 214 bits (236), Expect = 2e-50 Identities = 825/1277 (65%), Gaps = 28/1277 (2%) Strand=Plus/Plus Query 62570 TCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGC 62629 |||| ||| || || || |||||||| ||| || | ||||||||| || ||||| Sbjct 115109 TCCTTGATAGGTCTCATAAGGTCCTTCTGTCTTGGCAACTTCACAACTGGCTGTCAATGC 115168 Query 62630 ACCGTAATAAATGGTTTCGAAGATCTTCTTATTT--AGATCTTGTGCTTCCAGGCTATCA 62687 | | |||| || |||||||| || |||| || | |||||| ||||| || || Sbjct 115169 AGCAAAATATATTGTTTCGAAAAT-TTCTCGATTCAAAATCTTG-GCTTCTTCACTCTCG 115226 Query 62688 AATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGT 62747 || ||| || | ||||| || || || ||||| |||||||| | ||| || || Sbjct 115227 AAGGGAAGATGCATCTTGATAAAGGCATCGGCCAATCCCTGAACACCCAAACCAATGGGA 115286 Query 62748 CTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATT 62807 | ||||||| ||||| || |||||| || ||||||||||| | || || || Sbjct 115287 CGATGTCTCATATTACTCTTTCTAGCTTCCTCAACTGGATAATAATTCTTGTCAATGATC 115346 Query 62808 TTATTGAGA---TTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA- 62863 || || | | || || |||| |||||| | || || || | ||| | Sbjct 115347 TTGTTCAAATTCTTGGTGGCAAT---TTTGACAATTTCAAACAATTGTTCATGATCGTAG 115403 Query 62864 --TCG-CCCATCT-ATT-ACAAACATGTTCAAG-GCAACAGATGCCAGATTACAAACGGC 62917 || | ||| ||| ||| || | | ||| |||| | ||||| ||||| || || Sbjct 115404 GTACGTGTCGTCTCATTGACATAC-TTTGGAAGTGCAATACTTGCCAAGTTACACACAGC 115462 Query 62918 TACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGT 62977 ||| |||| | | | | |||| || || ||||| || | || | ||||| || Sbjct 115463 TACTTCATCTGGAGCTGTGTATTCAATAATTTCAGTACACAAGTTGGAGGATTTGATCGT 115522 Query 62978 TCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGT 63037 ||| | |||||||||||| ||| | ||||| |||||||||||||| ||| | ||| Sbjct 115523 TCCAAGATTTTGTTGATTTGATTTTCTATTACATGCATCCTTATAAAGCATGTAAGGAAC 115582 Query 63038 ACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATA-G 63096 |||||| ||||| || | || ||||| || ||| | || |||| | | | | Sbjct 115583 ACCAGTCTCAATTTGTGCCTCAATAATTGCAAACCAAAGCTCTTGAGCACGAACGACACG 115642 Query 63097 ATTTGTATCTCCTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAA 63156 || | || | || | || || | ||||||| | ||||| || ||||| | Sbjct 115643 GCGTGCACGACCCTCCT-TCTCATAACGCAAATACAATTCATTAAACTCTTCACCCCACA 115701 Query 63157 CATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCA 63216 ||| | | ||||||| ||||| ||||| | | ||||| | || ||||||| Sbjct 115702 CATCAGCAAGTCCAGGAGCTTCATTAGGACAAAAGAGTGACCAATGAGAATCCTCCTTCA 115761 Query 63217 CTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTT 63276 ||| | |||||| | |||| | ||| | | | | ||| | ||||| | || | || Sbjct 115762 CTCTCTCCATAAACAAATCATTCACCCACAAACCCAAAAACAAATCTCGAGCTCGAATTT 115821 Query 63277 CCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTT 63336 |||| ||||| ||||||||| | | ||| | || | | |||||| |||||||| || | Sbjct 115822 CCTCCTTTCCAGTATTCTTTCTCAAATCTAAAAAATCAAAAATATCGGAATGCCAAGGCT 115881 Query 63337 CCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGG 63396 |||| || | ||| | |||| ||||| || || ||||| | ||| | || | Sbjct 115882 CCAAATAAACGGCAAAGGCTCCTTTTCGTTTACCACCACCTTGATCCACGTAACGGGCAG 115941 Query 63397 TGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGA 63456 ||| || | || | | ||| ||||| | || || || | || ||||| || | Sbjct 115942 TGTCGTTGAATACACGAAGCATGGGAATGAGTCCATTGGAGGTTCCGTTGGTTCCTCGAA 116001 Query 63457 TATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAG 63516 | ||| |||| ||||||||| ||| || || | || || || || || | || | Sbjct 116002 TGTAGGATCCAGAGGCACGAATGTTATGAACGGACAAGCCGATACCACCAGCACTCTTGG 116061 Query 63517 AGATTAATGCGCATCGT-TTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATG 63575 | || || || || ||| || | || || || ||||| ||| ||| || ||||| Sbjct 116062 ATATCAAGGCACA-CGTCTTGAGTGTATCGTAAATACCTGAAATGGAATCGTCTTTCATG 116120 Query 63576 TTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGA 63635 | || || || | |||||| || ||| || ||||| || | |||||| Sbjct 116121 GCCACTAAGAAGCAAGAACTCATTTGAGGAGTGGGAGTACCAGCATTGAAGAGAGTAGGA 116180 Query 63636 GAAGCGTGCGTAAACCATTTTTCAG---AAAGTAGATTGTACGTCTCAATAGCTGAGTCT 63692 || ||||| | ||| | ||| ||||| | ||| || |||||||| || Sbjct 116181 GAGGCGTGGATGAAC---ATACCAGTGCTAAGTAATTCGTAGGTTTCAATAGCCTTCTCA 116237 Query 63693 ATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACG 63752 ||||| | |||||| || | |||||||| |||||||| ||||||| ||| | Sbjct 116238 ATATCGGAACCATGAATGCCCAAACTCACACGCATGAACATGTGTTGAGGTCGTTCGGCA 116297 Query 63753 ATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTG 63812 || | | ||| | ||||||| | |||| | ||| ||||| ||||| || | | Sbjct 116298 ATAACATCTCCGAGTTTGAGCAAGTAGCTTCTTTCAAGAGTCTTAAAGCCAAAGTAATCG 116357 Query 63813 TATGAAAAGTCTCGTTC 63829 || | | |||||||| Sbjct 116358 AATTGATAATCTCGTTC 116374 >seq93 Length=103736 Score = 203 bits (224), Expect = 4e-47 Identities = 393/575 (68%), Gaps = 4/575 (1%) Strand=Plus/Plus Query 33325 CCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTT 33384 || || |||| | ||| | ||| ||||| || || | ||| ||||| | || | ||| Sbjct 84888 CCTTCATCTCGAGAAATCAATTCATTGGAGAAGGTCAATCCAGGCATCAAACCTCTCTTC 84947 Query 33385 TTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAG 33444 || | |||||| |||||| ||| |||||| ||||||||| ||||| || ||||||| Sbjct 84948 TTCATCCAAAAGATGGAACAGAAAGATCCACTAAAGAAGATACCTTCCACACAAGCAAAG 85007 Query 33445 GCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGT-ATCCACTTTTGAGCCCAATCGGC 33503 ||||| | || || || ||| | | | | ||||| || ||||||| || Sbjct 85008 GCAATCAATCGTTCAGCA-AACAAGTTATCCGAGTTGATCCATTTCAAAGCCCAACGAGC 85066 Query 33504 CTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACT 33563 |||||||| || | || | || || |||||||| |||||| | | |||| | | Sbjct 85067 CTTCTTTTGAACGGATGGAACAGTATCAATGGCATTGAAGAGACGATGTCTTTCTCTCGT 85126 Query 33564 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33623 || |||| || || || || | | |||||| || | |||||| || |||||||| Sbjct 85127 GTCCTTAATGTAGGTTTCAATTAGAGTTGAATACATCTCTGCATGAATATTCTCAATGGC 85186 Query 33624 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 33683 || || ||||| ||||||||||| || || | ||| || ||||| | |||| ||| Sbjct 85187 AATTTGGAATCCATAGAAACATCTGGCTTCAGGAATTTGAACTTCAGCCATAAATTGTTG 85246 Query 33684 CGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTAT 33743 ||| || |||||||| || || || ||| ||||| || ||||| ||| || || Sbjct 85247 ACACAAGTTCTCATTCACAATACCATCGGAGGCAGCAAAGAAGGCCAAAACAGTCTTGAT 85306 Query 33744 AAAATATTTTTCGTCTGGTGTT-AGTTTATTCCAATCATTGATATCTTTAGATATATCTA 33802 || | || ||| | |||| || || | | ||| | | |||||| | | ||| | Sbjct 85307 GAAGTGTTGTTCAT-TGGTATTGAGAGTTTCCCATTGAGCAATATCTGTGTGGAGATCCA 85365 Query 33803 CTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCAGATGTCATAAT 33862 ||||||| | ||||| || |||||| ||||| || ||||| | ||| | | | || Sbjct 85366 CTTCTTCAGCAGTCCAGAAAGATGCCATGGCCTTCTTGTACATCTCCCAAACCTTTTGAT 85425 Query 33863 ATTGGATTGGGAAAATAACAAATCTATTTGGATTT 33897 || ||||||||| | ||| || | || ||||||| Sbjct 85426 GTTCGATTGGGAAGAGAACGAAACGATGTGGATTT 85460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622942730353840