Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= NC_007055.1 Length=43681 Score E Sequences producing significant alignments: (Bits) Value seq544 333 7e-87 >seq544 Length=469 Score = 333 bits (368), Expect = 7e-87 Identities = 287/352 (82%), Gaps = 5/352 (1%) Strand=Plus/Plus Query 28010 AATTATTAAGTTAGTAAATAAATTTTTTCATCTAATTCGCTGTAATCTATAGTACTAATA 28069 || |||||| | | |||| || ||||||||||||||||| |||||||| ||||||||| Sbjct 117 AAATATTAAATCAATAAACCTATCTTTTCATCTAATTCGCTATAATCTATTGTACTAATA 176 Query 28070 TTATTTTCAT-GAA--GAAGGTTTTTGTTCT--GCTCATTAACTTCTTTATTCATATCAT 28124 | ||| ||| ||| ||| |||| | | | |||| | |||||| || | || || Sbjct 177 TAGTTTACATAGAATTGAATACTTTTTTAATAGGGACATTTATTTCTTTTTTTAAATAAT 236 Query 28125 TTAAAATAAATATAAATTCATTTGGACGTTGTCtttttatttttttAGCTTGTATAGCAT 28184 |||| | | || || |||| | | ||||||||||||||||| ||||| ||||||| Sbjct 237 ATAAATTCGTTTTAGTTTTATTTTGCCTGTGTCTTTTTATTTTTTTTGCTTGCATAGCAT 296 Query 28185 CTGTTACTTTTGATTTTATAATCATAGAATTGTTAGGGTGAGAAATGGCATTGATAAATC 28244 |||||| ||| || || |||||||||||||| ||||||| |||||| |||||||||||| Sbjct 297 CTGTTATTTTCGACTTAATAATCATAGAATTATTAGGGTTAGAAATAGCATTGATAAATT 356 Query 28245 TTTCTTTTTGATTTTTCTTAGCACTTATAAAAAAGTCGAAACTATGAACAACACCGCTTG 28304 |||||||||||||||||||||| || ||||||||||||||| ||||||||||||| || Sbjct 357 TTTCTTTTTGATTTTTCTTAGCGCTAATAAAAAAGTCGAAATTATGAACAACACCACTGC 416 Query 28305 TTCCTACAATTGGTAAATCTCTTCCGTAAGAAATGTTATGTTCATCTAATTT 28356 |||||| ||| |||||||||||||||||| |||||||||||||||| ||||| Sbjct 417 TTCCTATAATAGGTAAATCTCTTCCGTAATAAATGTTATGTTCATCCAATTT 468 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 139656648058884