Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= NC_007059.1 Length=43114 Score E Sequences producing significant alignments: (Bits) Value seq554 695 0.0 >seq554 Length=1012 Score = 695 bits (770), Expect = 0.0 Identities = 440/476 (92%), Gaps = 2/476 (0%) Strand=Plus/Plus Query 25093 TGTTTTATCAATGATATTTGCGTCTTTTAAAGCGTCTCTTACATTTTTCCACAATTCGCT 25152 ||| ||||| || |||||||| ||||| ||||| ||||||||||||||||| || || || Sbjct 20 TGTATTATCGATAATATTTGCTTCTTTCAAAGCATCTCTTACATTTTTCCATAAGTCTCT 79 Query 25153 ATCTGTTATTTCAGAAGCTTTTGCAACGTTATTAATACCATTATAATTTGAAGAAGAATG 25212 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 80 ATCTGTTATTTCAGAAGCCTTTGCAACGTTATTAATACCATTATAATTTGAAGAAGAATG 139 Query 25213 AAAACCTGAACCTACTGTTGTTAAAACTAAAGCACTTGCTATCAATGtttttgttaatag 25272 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 140 AAAACCTGAACCTACTGTTGTTAAAACTAAAGCACTTGCTATCAATGTTTTTGTTAATAG 199 Query 25273 ttttttattcattttattttCTCCTGTAACTTATTTGCAATCGATTACAAAGtaat--tt 25330 ||||||||||||||||||||||||| ||||||||||||||| ||||| | |||| | || Sbjct 200 TTTTTTATTCATTTTATTTTCTCCTATAACTTATTTGCAATAGATTATAGAGTATTTATT 259 Query 25331 tacaattattatttatgtaaatcaattaaataattattaacaaatccataaaattttatc 25390 ||||| ||||||||| | ||| |||||||||||||||||||||| |||||| |||||| Sbjct 260 AACAATAATTATTTATTTGAATTAATTAAATAATTATTAACAAATATATAAAAATTTATC 319 Query 25391 attaaaatataataattttGAGCTAGAAATATTCGTCATTTATGCTATAATCATTTTAGA 25450 ||| ||||||| ||||||| ||| ||||||||||||||| |||||||||||| ||||||| Sbjct 320 ATTGAAATATATTAATTTTAAGCAAGAAATATTCGTCATCTATGCTATAATCGTTTTAGA 379 Query 25451 CACAGCAATGTGTTCAAATTTTCATCTATTCGTAAGTTAGCCTTCGGGCTGACTTTTTAT 25510 |||||||||||||||||| ||| ||||||| ||| ||||||||||||||||||||||||| Sbjct 380 CACAGCAATGTGTTCAAAATTTAATCTATTTGTACGTTAGCCTTCGGGCTGACTTTTTAT 439 Query 25511 TTCCATTATTCACATGTTAATCTTGTTGTTATTTAGGCAGGTACTTCGGTACNTGC 25566 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 440 TTCCATTATTCACATGTTAATCTTGTTGTTATTTAGGCAGGTACTTCGGTACTTGC 495 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 137842260426288