Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= NC_007060.1 Length=41902 Score E Sequences producing significant alignments: (Bits) Value seq554 810 0.0 >seq554 Length=1012 Score = 810 bits (898), Expect = 0.0 Identities = 509/541 (94%), Gaps = 6/541 (1%) Strand=Plus/Plus Query 25182 AGGCAGGTACTACGGTACTTGCCTA-TTTTTTATGCAAATTTaaaaaaaCACTTGAACGA 25240 ||||||||||| ||||||||||||| ||||||||||||| ||||||||||||| | | Sbjct 474 AGGCAGGTACTTCGGTACTTGCCTATTTTTTTATGCAAA-TTAAAAAAACACTCGCTTAA 532 Query 25241 TAAACAATTGTTTAGTATAATTATATTTGTAGGTTAGTTGATGACTTACAAATTATGTGT 25300 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 533 TAAACACTTGTTTAGTATAATTATATTTGTAGGTTAGTTGATGACTTACAAATTATGTGT 592 Query 25301 AAGGAGGTGAAAAGCCTCATGCTAGACATAATAAAAACACTTCTAGAACATCAAGTATTG 25360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 593 AAGGAGGTGAAAAGCCTCATGCTAGACATAATAAAAACACTTCTAGAACATCAAGTATTG 652 Query 25361 GCAGTACTGATAATTCCAGAAGTGTTAAAACAACTTAGAGAATGGCATCTCGGCTACCTA 25420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 653 GCAGTACTGATAATTCCAGAAGTGTTAAAACAACTTAGAGAATGGCATCTCGGCTACCTA 712 Query 25421 GACCGAAAGCCAAACAACAAAGATTAACATTATGCTTGGAGCCTGATGGCTCCTCCTTAC 25480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 713 GACCGAAAGCCAAACAACAAAGATTAACATTATGCTTGGAGCCTGATGGCTCCTCCTTAC 772 Query 25481 ACTTATATAATATAATATTATTTGGAGGTTTTCAATTATGACAGAACAAATGTATTTAAT 25540 ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| Sbjct 773 ACTTATATAATATAATATTATTTCGAGATTTTCAATTATGACAGAACAAATGTATTTAAT 832 Query 25541 ATTGTTTTTATTAAGCCTACCATTGTTATTATTTATCGGGAGAAAAACACATTTTTATTG 25600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 833 ATTGTTTTTATTAAGCCTACCATTGTTATTATTTATCGGGAGAAAAACACATTTTTATTG 892 Query 25601 TTTAGATAAAAAGAATGGACGTAGATAATATGAG-TGATTATAAATTAAAAATAATTGAA 25659 |||||||||||||||||||||||| | || | ||| |||||| ||||| ||| | Sbjct 893 TTTAGATAAAAAGAATGGACGTAGTTTCGCTGGGAAAATTTTAAATT-TAAATACTTGGA 951 Query 25660 TTGATCAAAAGTGAT-ATAACA-GGTTACCAAATTCACAAACAAACTGGCGTAGCGCAAT 25717 || ||||||| |||| || || ||||| ||||||||||||||||||||||||||||||| Sbjct 952 TTTATCAAAAATGATCGTAGCATGGTTAGCAAATTCACAAACAAACTGGCGTAGCGCAAT 1011 Query 25718 A 25718 | Sbjct 1012 A 1012 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 133963886862432