Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq29 159 3e-34 seq82 147 2e-30 seq42 141 9e-29 seq120 140 3e-28 seq36 123 2e-23 seq151 118 1e-21 seq76 116 4e-21 seq26 114 1e-20 seq38 107 2e-18 >seq29 Length=427163 Score = 159 bits (176), Expect = 3e-34 Identities = 174/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26765 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATC 26824 ||| |||||| | || || || || |||||||| || | ||||| | ||| | ||||| Sbjct 48551 CAACATGCAAATCTTCGTCAAGACTTTAACTGGCAAGACTATCACTCTTGAAGTCGAATC 48610 Query 26825 AAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGA 26884 |||||||| |||||| | || ||| ||||| ||||| ||||| || || || || Sbjct 48611 CAACGACACAATCGAGAACGTGAAAAGCAAGATCCAAGACAAGGAAGGAATTCCACCTGA 48670 Query 26885 TCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTA 26944 ||||||||||||||| | | ||| || ||| | ||||||| |||| | | |||||| Sbjct 48671 TCAACAAAGACTCATCTTTGCCGGAAAGCAATTAGAAGATGGAAGAACCTTGTCCGACTA 48730 Query 26945 TAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||||||||||| ||||| ||| |||| || ||||| ||||| ||||| || Sbjct 48731 CAACATTCAAAAGGAATCCACTCTCCACCTTGTCCTCAGACTCAGAGGTGG 48781 >seq82 Length=211372 Score = 147 bits (162), Expect = 2e-30 Identities = 171/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26765 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATC 26824 || ||||||| | || || || || || || || || | ||||| | || | ||||| Sbjct 147936 CACAATGCAAATTTTCGTTAAGACCTTGACCGGTAAGACCATCACTTTGGAGGTCGAATC 147877 Query 26825 AAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGA 26884 ||||||||||||||| | ||||| ||||||| ||||| ||||| || ||||| || Sbjct 147876 CAACGACACCATCGAGAATGTCAAGTCAAAGATTCAAGACAAGGAAGGTATTCCTCCAGA 147817 Query 26885 TCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTA 26944 |||||||||| | || | | ||| || ||| | ||||||| |||| | | ||||| Sbjct 147816 TCAACAAAGATTGATCTTTGCCGGAAAGCAATTGGAAGATGGCAGAACCTTGTCTGACTA 147757 Query 26945 TAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||||||||||| |||||||| | || ||||| ||||| | |||||||| Sbjct 147756 CAACATTCAAAAGGAATCTACATTGCACTTGGTCTTGAGATTGAGAGGAGG 147706 >seq42 Length=292872 Score = 141 bits (156), Expect = 9e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 ||||||| | ||||| ||||| || ||||| || | || || | ||| | ||||| || Sbjct 166167 AATGCAAATCTTTGTTAAAACTTTGACTGGCAAGACCATTACATTGGAAGTCGAATCCAA 166226 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 || ||||||||| | ||||| |||||| || || ||||| || ||||| || || Sbjct 166227 TGATACCATCGAGAATGTCAAGTCAAAGATCCAAGATAAGGAAGGCATTCCTCCAGACCA 166286 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 ||||||| | |||| || || || ||| | ||||||| |||| | || ||| || || Sbjct 166287 ACAAAGATTGATTTTCGCTGGTAAGCAATTGGAAGATGGAAGAACCCTCTCCGATTACAA 166346 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 |||||||||||| |||||| | || || || ||||| | || ||||| Sbjct 166347 CATTCAAAAAGAGTCTACTCTTCACCTTGTTTTGAGATTGAGGGGAGG 166394 Score = 111 bits (122), Expect = 2e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | || || || || | ||||| || | || || | ||| | ||||| ||| Sbjct 165940 ATGCAAATCTTCGTCAAGACCCTCACTGGTAAGACAATTACTTTGGAAGTTGAATCCAAC 165999 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | || || |||||| || || ||||| || || || |||||| Sbjct 166000 GACACCATCGAAAACGTGAAGAGCAAGATTCAAGATAAGGAAGGTATTCCACCAGATCAA 166059 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||| | | |||| | || |||||| | ||||| | |||| || |||||| ||| Sbjct 166060 CAACGTTTGATTTTTGCTGGTAAACAATTGGAAGACGGAAGAACTCTCTCCGACTACAAC 166119 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 |||||||| ||||| || | || || || || ||| | |||||||||| Sbjct 166120 ATTCAAAAGGAATCCACATTGCACCTTGTTCTTAGATTGAGAGGAGGAA 166168 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | || || ||||| || || ||||| | || || | || | || || || Sbjct 165712 ATGCAAATCTTCGTTAAAACCTTGACCGGAAAGACCATTACTCTTGAGGTTGAGTCCAAT 165771 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || ||||| || | || ||| |||||| ||||| ||||| || || || || ||| Sbjct 165772 GATACCATTGAAAACGTTAAATCAAAGATCCAAGACAAGGAAGGAATTCCACCAGACCAA 165831 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||||||||||| | | ||| || ||| | ||||| | |||| | | || || ||| Sbjct 165832 CAAAGACTCATCTTTGCCGGAAAGCAATTAGAAGACGGAAGAACCTTGTCTGATTACAAC 165891 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 |||||||||||||| || | || |||| ||||||| ||||| || Sbjct 165892 ATTCAAAAAGAATCAACATTGCACTTGGTTTTGAGACTCAGAGGTGG 165938 >seq120 Length=320511 Score = 140 bits (154), Expect = 3e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 ||||||| ||||||| ||||| |||||||||||| | ||||| | ||| |||| || || Sbjct 60816 AATGCAATTGTTTGTGAAAACCTTAACTGGAAAAACTATCACATTGGAAGTAGAGTCCAA 60757 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 |||| | || ||| | || || || ||| | || ||||| || || || ||||||| Sbjct 60756 CGACTCGATTGAGAATGTGAAGAGCAAAATTGCTGATAAAGAGGGAATTCCAGCCGATCA 60697 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 |||| | | ||||||| ||||||||| | || |||| |||| || || || || Sbjct 60696 ACAACGTTTAATTTACGCTGGCAAACAATTGGAGGATGGAAGAACAATCTCTGATTACAA 60637 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 | | |||||||| || || || || || || |||||||| | ||||||| Sbjct 60636 CTTGCAAAAAGATTCGACCATTCACCTTGTGTTGAGACTTCGTGGAGGAA 60587 >seq36 Length=122865 Score = 123 bits (136), Expect = 2e-23 Identities = 202/287 (70%), Gaps = 8/287 (3%) Strand=Plus/Plus Query 147114 ACGGTGAATTGAATCGTGTTTGCTGCGGGTTTGGTTCTCAAATAGTACATGCCCGTTTTT 147173 || ||||||||||| | | || || |||| ||||||||||| ||||| || || || Sbjct 114501 ACAGTGAATTGAATGGCATCGGCAGCTGGTTGTGTTCTCAAATAATACATTCCAGTCTTC 114560 Query 147174 AAACCCTTTTCCCAAGAATAGTCGTGAATGGATGATAAAACTTTATA---GGTTGGATTG 147230 || ||||| ||||| ||| ||| ||||| | | | ||| | || |||| || Sbjct 114561 AATCCCTTACTCCAAGCATAAAAGTGCATGGAAG---ACATTTTGGAGATGGATGGAGTG 114617 Query 147231 GCCACAAAAAGATTGAGCGATTGGCTCTGATCGATGTAAGGTCCCCGCTCTGCGGCCATG 147290 || | ||| | |||||| ||||| ||||| ||| | || | | ||| ||| | Sbjct 114618 GCAATAAAGACATTGAGTGATTGAGATTGATCAATGAATGGAGCTCTCTCAATGGCAAGA 114677 Query 147291 TCCAACACTACT-TTTTGTTTAATTTCCCAAGCGGTCTTGAAGAGCGCCTTGATATTGTG 147349 ||||||| ||| |||||||| ||||||||| | |||||| | | |||| |||| | Sbjct 114678 TCCAACA-AACTCTTTTGTTTGATTTCCCAAACAGTCTTGTACAATTCCTTAATATCATC 114736 Query 147350 TGGAATTTCATCAATATTTTGTACAGATCCGTTGTTTTTAATAATTT 147396 ||||||| || |||| ||||| | ||| || |||| |||||||| Sbjct 114737 TGGAATTCCAGCAATGTTTTGAATAGAACCTCTGTTGGCAATAATTT 114783 >seq151 Length=76492 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | || || || || || || ||||| | ||||| || ||| ||| || || Sbjct 51037 ATGCAATTATTCGTCAAGACTTTGACAGGAAAGACCATCACGATTGAAGCAGAGTCCAAT 51096 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||| | || ||| | || || ||||||| || || ||||| || || | |||||| Sbjct 51097 GACTCGATTGAGAACGTGAAGAGAAAGATTTGTGATAAGGAAGGTATTCCAGCGGATCAA 51156 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||| | | ||||||| || |||||| | || |||| |||| || ||||||| | Sbjct 51157 CAACGTTTAATTTACGCTGGAAAACAATTGGAGGATGGAAGAACAGTTTCTGACTATAGC 51216 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGA 26996 | |||||||| || ||||||||||| || ||||||| |||||||| Sbjct 51217 TTGCAAAAAGATTCAACTATCCATCTTGTTTTGAGACTGCGAGGAGGA 51264 >seq76 Length=223365 Score = 116 bits (128), Expect = 4e-21 Identities = 135/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 26817 TTAGAATCAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATA 26876 ||||| || ||||||||||||||| | || || |||||| ||||| ||||| || Sbjct 84466 TTAGAGTCTAACGACACCATCGAGAATGTGAAGTCAAAGATCCAAGACAAGGAAGGTATT 84407 Query 26877 CCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTC 26936 ||||| |||||||||||| | |||| | || || ||| | || |||| |||| | Sbjct 84406 CCTCCAGATCAACAAAGATTGATTTTTGCTGGTAAGCAATTGGAGGATGGCAGAACATTG 84347 Query 26937 AGCGACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGA 26996 ||||| ||||||||||| ||||| ||| |||| ||||| ||||| | ||||| || Sbjct 84346 TCTGACTACAACATTCAAAAGGAATCCACTCTCCACTTGGTCTTGAGATTGAGAGGTGGT 84287 Query 26997 AA 26998 || Sbjct 84286 AA 84285 >seq26 Length=133099 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26765 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATC 26824 ||| |||||| | ||||| ||||| || ||||| || | || ||| | ||| |||| || Sbjct 73058 CAACATGCAAATCTTTGTGAAAACCTTGACTGGTAAGACCATTACCTTGGAAGTAGAGTC 73117 Query 26825 AAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGA 26884 || ||| | |||||| | ||||| || || |||| || |||||||| || |||| Sbjct 73118 CAATGACTCGATCGAGAACGTCAAGAGCAAAATAGCCGATAAGGAAGGGATTCCAGCCGA 73177 Query 26885 TCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTA 26944 ||||||| || | |||| || || |||||| | || |||| |||| | | || || Sbjct 73178 TCAACAACGATTGATTTTCGCAGGAAAACAATTAGAGGATGGAAGAACCTTGTCTGATTA 73237 Query 26945 TAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 | | |||| || || ||||| | ||| |||| ||||| | || ||||| Sbjct 73238 CAGCGTTCAGAAGGATTCTACCTTGCATTTGGTGTTGAGATTGAGGGGAGG 73288 >seq38 Length=237352 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | ||||| | ||| |||||||||||| | ||||| | || ||| || Sbjct 109291 ATGCAACTCTTTGTGAGAACTTTAACTGGAAAAACAATCACTTTGGAGGCAGAGATGAAT 109232 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| || ||| || || |||||| || || || || || ||| | |||||| Sbjct 109231 GACACTATTGAGAGTGTAAAGAGTAAGATTTTTGAAAAGGATGGTATTCCTTCGGATCAA 109172 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 |||||| | || | | || || ||| | || |||| |||| | |||||||| ||| Sbjct 109171 CAAAGAATTATCTTTGCTGGTAAGCAATTGGAGGATGGAAGAACTTTGAGCGACTACAAC 109112 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 |||||||| || || ||| | || |||| ||||||| ||||| |||| Sbjct 109111 ATTCAAAAGGATTCCACTCTACACTTGGTTTTGAGACTCAGAGGTGGAA 109063 Score = 82.4 bits (90), Expect = 7e-11 Identities = 153/222 (69%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 26764 ACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAAT 26823 ||||||||||| | || || |||||| | || || | | | ||||| | || | || | Sbjct 109524 ACAAAATGCAATTATTCGTTAAAACACTTACAGGTAGAACAATCACATTGGATGTTGAGT 109465 Query 26824 CAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCG 26883 | || ||| | || ||| | || ||||| || || || || || ||||| || || | | Sbjct 109464 CCAATGACTCGATTGAGAATGTTAAACAGAAAATCACAGATAAGGAAGGCATTCCAGCTG 109405 Query 26884 ATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GAC 26942 |||||||| | | ||||| | || |||||| | || |||| || ||| | | | || Sbjct 109404 ATCAACAACGTTTGATTTATGCTGGAAAACAATTAGAGGATGGAAG-AACTTTATCGGAT 109346 Query 26943 TATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGA 26984 || || | ||||| || ||||| | || |||| ||||| Sbjct 109345 TACAATGTACAAAAGGATGCTACTCTTCACTTGGTGTTGAGA 109304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478658965597280