Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq36 273 6e-68 seq157 98.7 3e-15 seq64 86.0 2e-11 >seq36 Length=122865 Score = 273 bits (302), Expect = 6e-68 Identities = 701/1061 (66%), Gaps = 10/1061 (1%) Strand=Plus/Minus Query 363438 TGATATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCC 363497 || ||||| ||||| || || || ||||| |||||||| | | || || ||| | | Sbjct 116303 TGTTATTGCCGAACGACCTCAACACATGTTCATGCGTGTGAGTTTGGGCATTCATGGTTC 116244 Query 363498 GGATGTTGATGCCGCGATTGAAACATATAAGCTTCTAAGTGCTCGTGTATTCACGCACGC 363557 ||| |||| || |||||||| || | | || || || || | |||| ||||| Sbjct 116243 CGATATTGAGAAGGCTATTGAAACCTACGAATTACTTAGCACTGGTATGTTCATCCACGC 116184 Query 363558 CACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCT 363617 | | || || | | ||||||||| |||| | ||| || ||| ||||||||| | | Sbjct 116183 CTCTCCTACTCTCTTCAATGCTGGTACTCCCACTCCTCAAATGAGTTCTTGCTTCTTAGT 116124 Query 363618 AAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTAT 363677 ||||| ||||||||||| ||||| | || ||||| |||| ||||| | || Sbjct 116123 GGCCATGAAAGACGATTCCATTTCAGGTATTTACGATACACTCAAGACGTGTGCCTTGAT 116064 Query 363678 TTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCA-CAGAACAGTT 363736 ||||||| ||| || || || || | || | || || ||||||| | | | | Sbjct 116063 ATCCAAGAGTGCTGGTGGTATCGGCTTGTCCGTTCATAACATTCGTGCCTCTGGATCCT- 116005 Query 363737 ACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACA 363796 ||||||| || || ||| ||| ||||| || |||||||||||||||| || || Sbjct 116004 ACATTCGAGGAACCAACGGAACCTCCAATGGACTCATTCCCATGCTTCGTGTATTCAACG 115945 Query 363797 ATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATC 363856 | ||||| | ||||| || || ||||| || || || ||||| || ||||| | ||| Sbjct 115944 ACACTGCCCGTTACGTGGATCAAGGTGGTGGTAAACGAAAAGGAGCCTTTGCCGTTTATT 115885 Query 363857 TCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAG 363916 | |||||| ||| ||||||||||||| ||| | || | | || || || ||||| | Sbjct 115884 TGGAGCCTTGGCATTCCGATATTTTTGATTTTTTAGATTTGAGAAAGAATACTGGAAAGG 115825 Query 363917 AGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGC 363976 ||||| | || || || ||| |||| | | | ||||| ||| |||||| || Sbjct 115824 AGGAAATTCGAGCTCGAGATTTGTTTTTGGGTTTGTGGGTGAATGATTTGTTTATGGAGA 115765 Query 363977 GCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCG 364036 | ||| ||| | | |||||||||||||||| || | ||| ||| || ||| | | Sbjct 115764 GAGTGAAGGAGGATTCTCATTGGTCACTCTTTTGTCCTAATGAAGCTCCTGGACTTGCTG 115705 Query 364037 ATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTC 364096 |||| |||||||| || | | || | || ||||| |||||| || | Sbjct 115704 ATGTGTGGGGTGAAGAGTTTAATGAATTGTATTTGCGTTATGAGAAGGAGGGTCGTGCAC 115645 Query 364097 GTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAG 364156 | ||| || || |||| |||||||| || || || | || |||||||| | Sbjct 115644 GCCGTGTCGTTCGTGCTCAAGAGCTTTGGTTTGCAATTATTGAGGCACAAATTGAGACTG 115585 Query 364157 GAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTG 364216 | || || ||| | || || ||| | || || | || || || || || | |||| Sbjct 115584 GTGTTCCTTACATGCTTTATAAGGATGCATGTAATAGAAAATCAAATCAACAAAATCTTG 115525 Query 364217 GTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGA 364276 | || || | |||| | ||||| || |||||||||||||| ||||| || || Sbjct 115524 GAACGATCAAATCCTCCAACTTGTGTACTGAAATTATTGAATACACAGCTCCAGATGAAG 115465 Query 364277 CTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAAA--AGATG----GTA 364330 || || |||||| | || || || ||||| || ||| || ||| | ||| Sbjct 115464 TAGCTGTGTGTAACTTGGCAAGTATTGCACTTCCAAAGTATGTCAATGAGACGACACGTA 115405 Query 364331 CTTTTGACCACCAGCATCTTTATGACGTAACCTATCATGCTACTTGCAATCTCGACAAGG 364390 | | || || | || | | ||| | | | ||| || ||| | ||||| Sbjct 115404 CCTACGATCATGAACAATTGTTTGAAATTGTCAAAATTGCCACCAAGAATTTGAACAAGA 115345 Query 364391 TTATCGACAAGAATTATTATCCAATTCCTGAAGC-CGAGCGTTCTAATATGCGTCATCGC 364449 | || |||||||||||||||||| || ||||| || | ||||||| | ||||| Sbjct 115344 TCATTGACAAGAATTATTATCCAGTTGAGGAAGCTAGAAAG-AGTAATATGAGACATCGT 115286 Query 364450 CCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTAT 364490 || |||||| | ||||| ||||| | || || | ||||| Sbjct 115285 CCCATTGGTTTGGGTGTTCAGGGATTGGCCGATGCCTTTAT 115245 >seq157 Length=153911 Score = 98.7 bits (108), Expect = 3e-15 Identities = 321/487 (66%), Gaps = 20/487 (4%) Strand=Plus/Plus Query 111315 TTTCCACTTCTCACAACAAAGCGAACATATTGGAAGGGAATTGTCGAAGAACTTCTGTGG 111374 ||||| |||||||| || ||| || | |||||| || ||| | ||| | || ||| Sbjct 124918 TTTCCTCTTCTCACCACCAAGAGAGTCTTTTGGAAAGGTGTTGCAAAGGAATTACTTTGG 124977 Query 111375 TTTATTCGCGGAAGTACAAATGCAAATGAACTTGCAGCAAAAAATGTAAAAATTTGGGAT 111434 || || || ||| |||||| | || | || || |||| | ||||||||| Sbjct 124978 TTCATCTCTGGTGATACCAATGCACGTACTCTCTCTTCACAAGATGTTCACATTTGGGAT 125037 Query 111435 GGAAATGGATCACGTGACTTTCTAGATTCAGTTGGTCTTGTCGACAACG--AAGAAGGTG 111492 || |||| | || | | | ||||||| |||| ||| | || || |||| | Sbjct 125038 GGCAATGCAAGTCGACAATATTTAGATTCCATTGGA-TTGACT-CATCGTGAAGAGATGG 125095 Query 111493 ATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGACTACAAAACCATGC 111552 || | |||||||| || |||||||||||| | || | |||||| |||| ||||||||| Sbjct 125096 ATTTAGGACCAGTCTATGGATTTCAATGGAGACATTGGGGTGCACACTATGAAACCATGC 125155 Query 111553 ACGACTCA-TATGATTCACAGGGAACTGATCAATT-ACAGAATGTCATTGATCAAATTAA 111610 | ||| | ||| | | | || | ||||||||| | | | ||| | ||| ||| Sbjct 125156 A-TACTAATTATTCTCAAAAAGGTATTGATCAATTGAAAAAGTGT-GTCGATACCATTCG 125213 Query 111611 GAACAACCCAACTTCTCGTCGCATTATTATGAGTGCATGGAA---CCCAAATGCATTGGA 111667 |||| ||||| |||| | |||||| | ||||||||| || || || Sbjct 125214 TCACAATCCAACCAATCGTAGAATTATTCTCTCTGCATGGAATGTTTCAGAT---TTACC 125270 Query 111668 AAAAATGGCACTTCCACCATGTCATCTTATGTGCCAGTTTTATG----TACACGACGGGA 111723 |||||||||||||||| |||||| | | || || || | | |||| | Sbjct 125271 TCAAATGGCACTTCCACCTTGTCATTTATTATGTCAATTCTGGGTGGATACAGATACACA 125330 Query 111724 TGCTTTCA--TGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAA 111781 | || | || ||||||||||| |||| |||||| ||| | || || || ||||| Sbjct 125331 AGAATTGAGTTGTCAAATGTATCAAAGATCATGTGATATGGGTTTAGGAGTACCTTTTAA 125390 Query 111782 TATTGCA 111788 ||||||| Sbjct 125391 TATTGCA 125397 >seq64 Length=162620 Score = 86.0 bits (94), Expect = 2e-11 Identities = 152/217 (70%), Gaps = 6/217 (3%) Strand=Plus/Minus Query 145538 TTCATCTGAAAATCCAGTTCCGATCTTGCATACACTTTGGAACACTTCTTCGTCTGGATC 145597 |||||| |||||||||||||| ||||| || | | ||| | || || || || Sbjct 129486 TTCATCAGAAAATCCAGTTCCAATCTTACAAATAGATTGATATTGATCAGATTCAGGGTC 129427 Query 145598 ATA-CACCGCAAGAAGGTATGCACCATATACACCAGTACGTTTTCCGCGACCGGTATACC 145656 ||| || ||| || || ||||||| |||||||| | |||||| || |||| | Sbjct 129426 ATAGCAAGCCAACAAAA-ATCCACCATAAACACCAGTTCTTTTTCCTTTGCCCTTATAAC 129368 Query 145657 CCGCAATTGGTACAAGATCACAACT--ATCACCCATTCCGGCAAGATAATCCTTTTTAAG 145714 | |||| || | |||| ||| |||||| | || ||| |||||||| || || Sbjct 129367 CACCAATCACAACTAAATCA--ACTGAATCACCAAGACCTTCAATGTAATCCTTCTTGAG 129310 Query 145715 TTTTAGCCAATTGAGAGAACGTTTCGATGGTTCATAG 145751 ||| ||||| |||| || | |||||||||||||||| Sbjct 129309 TTTGAGCCAGTTGAAGGATCTTTTCGATGGTTCATAG 129273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303344014648868