Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq42 168 6e-37 seq82 159 3e-34 seq120 129 5e-25 seq36 123 2e-23 seq29 123 2e-23 seq76 111 1e-19 seq38 100 2e-16 >seq42 Length=292872 Score = 168 bits (186), Expect = 6e-37 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | ||||| ||||| || ||||| || | ||||| | |||||||| |||| Sbjct 166167 AATGCAAATCTTTGTTAAAACTTTGACTGGCAAGACCATTACATTGGAAGTCGAATCCAA 166226 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 || ||||||||| | ||||| |||||| || || |||||||| ||||| || || Sbjct 166227 TGATACCATCGAGAATGTCAAGTCAAAGATCCAAGATAAGGAAGGCATTCCTCCAGACCA 166286 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| ||| |||||| || || |||||| | ||||||| |||| | || |||||| || Sbjct 166287 ACAAAGATTGATTTTCGCTGGTAAGCAATTGGAAGATGGAAGAACCCTCTCCGATTACAA 166346 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 |||||||||||| ||||| |||| | || || |||||||| ||||| Sbjct 166347 CATTCAAAAAGAGTCTACTCTTCACCTTGTTTTGAGATTGAGGGGAGG 166394 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || ||||| || || ||||| | ||||| | || || ||| |||| Sbjct 165712 ATGCAAATCTTCGTTAAAACCTTGACCGGAAAGACCATTACTCTTGAGGTTGAGTCCAAT 165771 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || ||||| || | || ||| |||||| ||||| ||||| || || || || ||| Sbjct 165772 GATACCATTGAAAACGTTAAATCAAAGATCCAAGACAAGGAAGGAATTCCACCAGACCAA 165831 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || ||||| || | | ||| |||||| | ||||| | |||| | | ||||| ||| Sbjct 165832 CAAAGACTCATCTTTGCCGGAAAGCAATTAGAAGACGGAAGAACCTTGTCTGATTACAAC 165891 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 |||||||||||||| ||| | || || || || ||| | ||||| || Sbjct 165892 ATTCAAAAAGAATCAACATTGCACTTGGTTTTGAGACTCAGAGGTGG 165938 Score = 113 bits (124), Expect = 4e-20 Identities = 164/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 23986 ACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGG 24045 |||| |||||| | || || || || | ||||| || | || || |||||||||| Sbjct 165479 ACAAGATGCAAATCTTCGTCAAGACCCTCACTGGTAAGACTATCACTCTCGAAGTCGAAT 165538 Query 24046 CCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCG 24105 |||||||||| || ||| | || ||| ||||| ||||| ||||| || || || | Sbjct 165539 CCAACGACACGATTGAGAACGTGAAAAGCAAGATCCAAGACAAGGAAGGAATTCCACCTG 165598 Query 24106 ATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATT 24165 ||||||| | |||||| | || || ||| | ||||| | |||| | | ||| | Sbjct 165599 ATCAACAACGTTTGATTTTTGCTGGTAAACAATTGGAAGACGGAAGAACCTTGTCCGACT 165658 Query 24166 ATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 | ||||| ||||| ||||| || | || || || || ||||||||||| || Sbjct 165659 ACAACATCCAAAAGGAATCCACTCTCCACTTGGTCTTGAGATTGAGAGGTGG 165710 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || || | ||||| || | ||||| | ||||| || ||||| Sbjct 165940 ATGCAAATCTTCGTCAAGACCCTCACTGGTAAGACAATTACTTTGGAAGTTGAATCCAAC 165999 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | || || |||||| || || ||||| || || || |||||| Sbjct 166000 GACACCATCGAAAACGTGAAGAGCAAGATTCAAGATAAGGAAGGTATTCCACCAGATCAA 166059 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || | |||||| | || || ||| | ||||| | |||| || ||| || ||| Sbjct 166060 CAACGTTTGATTTTTGCTGGTAAACAATTGGAAGACGGAAGAACTCTCTCCGACTACAAC 166119 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 |||||||| ||||| ||| | || | || | ||||||||||||||| Sbjct 166120 ATTCAAAAGGAATCCACATTGCACCTTGTTCTTAGATTGAGAGGAGGA 166167 >seq82 Length=211372 Score = 159 bits (176), Expect = 3e-34 Identities = 174/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 || ||||||| | || || || || || || || || | || || | || ||||| | Sbjct 147936 CACAATGCAAATTTTCGTTAAGACCTTGACCGGTAAGACCATCACTTTGGAGGTCGAATC 147877 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 |||||||||||||||| | ||||| ||||||| ||||| ||||| || ||||| || Sbjct 147876 CAACGACACCATCGAGAATGTCAAGTCAAAGATTCAAGACAAGGAAGGTATTCCTCCAGA 147817 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166 |||||| ||| |||| | | ||| |||||| | ||||||| ||||| | | || || Sbjct 147816 TCAACAAAGATTGATCTTTGCCGGAAAGCAATTGGAAGATGGCAGAACCTTGTCTGACTA 147757 Query 24167 TAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||||||||||| ||||||||| | || || || || |||||||||||||| Sbjct 147756 CAACATTCAAAAGGAATCTACATTGCACTTGGTCTTGAGATTGAGAGGAGG 147706 >seq120 Length=320511 Score = 129 bits (142), Expect = 5e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| ||||||| ||||| |||||||||||| | || || | ||||| ||| |||| Sbjct 60816 AATGCAATTGTTTGTGAAAACCTTAACTGGAAAAACTATCACATTGGAAGTAGAGTCCAA 60757 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 |||| | || ||| | || || || ||| | || ||||| || || || ||||||| Sbjct 60756 CGACTCGATTGAGAATGTGAAGAGCAAAATTGCTGATAAAGAGGGAATTCCAGCCGATCA 60697 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| | | ||||||| ||||| ||| | || |||| |||| || ||||| || Sbjct 60696 ACAACGTTTAATTTACGCTGGCAAACAATTGGAGGATGGAAGAACAATCTCTGATTACAA 60637 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 | | |||||||| || || ||||| | ||||| ||| | | |||||| Sbjct 60636 CTTGCAAAAAGATTCGACCATTCACCTTGTGTTGAGACTTCGTGGAGGA 60588 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 || |||||| | ||||| |||||| | ||||| | | | || || | || || ||| | Sbjct 61046 AACATGCAACTATTTGTCAAAACACTCACTGGTAGAACTATCACATTGGAGGTTGAGTCT 60987 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 || ||| | || ||| | || || || || || || || ||||| || || | ||| Sbjct 60986 AATGACTCGATTGAGAATGTGAAGAGCAAAATCACAGATAAGGAAGGAATTCCAGCTGAT 60927 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167 |||||| | |||| || | ||||||||| | || |||| |||| || || || Sbjct 60926 CAACAGCGTTTGATCTATGCAGGCAAGCAATTGGAGGATGGAAGAACACTCTCTGACTAC 60867 Query 24168 AACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 ||| ||||||| || |||| ||||||| || |||||||||||||| ||| Sbjct 60866 AACGTTCAAAAGGATGCTACCCTTCATTTGGTCTTAAGATTGAGAGGTGGA 60816 >seq36 Length=122865 Score = 123 bits (136), Expect = 2e-23 Identities = 202/287 (70%), Gaps = 8/287 (3%) Strand=Plus/Plus Query 131864 ACGGTGAATTGAATTGTATTCGCAGCAGGCTTAGTTCTTAAATAATACATGCCCGTCTTC 131923 || ||||||||||| | || ||||| || | ||||| ||||||||||| || |||||| Sbjct 114501 ACAGTGAATTGAATGGCATCGGCAGCTGGTTGTGTTCTCAAATAATACATTCCAGTCTTC 114560 Query 131924 AAGCCTTTCTCCCAAGAATAATTGTGTATGGACGATAAAATTTTGTAGCTG---GGATTG 131980 || || || ||||| |||| ||| ||||| | | |||||| || || ||| || Sbjct 114561 AATCCCTTACTCCAAGCATAAAAGTGCATGGAAG---ACATTTTGGAGATGGATGGAGTG 114617 Query 131981 GCCACAAACAGATTGAGCGATTGACTCTGATCGATGTAAGGTCCCCTGTCTGCGGCCATA 132040 || | ||| | |||||| |||||| ||||| ||| | || | || || ||| | | Sbjct 114618 GCAATAAAGACATTGAGTGATTGAGATTGATCAATGAATGGAGCTCTCTCAATGGCAAGA 114677 Query 132041 TTCAACAATACT-TTCTGCTTAATTTCCCAAGCGGTCTTGAAGAGCGCCTTGACGTCGTG 132099 | |||||| ||| || || || ||||||||| | |||||| | | |||| | || | Sbjct 114678 TCCAACAA-ACTCTTTTGTTTGATTTCCCAAACAGTCTTGTACAATTCCTTAATATCATC 114736 Query 132100 TGGAATGTCATCGATATTCTGTACAGATCCGTTGTTTTTGATAATTT 132146 |||||| || | || || || | ||| || |||| ||||||| Sbjct 114737 TGGAATTCCAGCAATGTTTTGAATAGAACCTCTGTTGGCAATAATTT 114783 >seq29 Length=427163 Score = 123 bits (136), Expect = 2e-23 Identities = 148/201 (74%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 ||| |||||| | || || || || |||||||| || | || || | |||||||| | Sbjct 48551 CAACATGCAAATCTTCGTCAAGACTTTAACTGGCAAGACTATCACTCTTGAAGTCGAATC 48610 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 ||||||||| |||||| | || ||| ||||| ||||| ||||| || || || || Sbjct 48611 CAACGACACAATCGAGAACGTGAAAAGCAAGATCCAAGACAAGGAAGGAATTCCACCTGA 48670 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166 |||||| ||||| || | | ||| |||||| | ||||||| |||| | | ||| || Sbjct 48671 TCAACAAAGACTCATCTTTGCCGGAAAGCAATTAGAAGATGGAAGAACCTTGTCCGACTA 48730 Query 24167 TAACATTCAAAAAGAATCTAC 24187 ||||||||||| ||||| || Sbjct 48731 CAACATTCAAAAGGAATCCAC 48751 >seq76 Length=223365 Score = 111 bits (122), Expect = 1e-19 Identities = 130/176 (74%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 24042 GAGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCT 24101 ||| | ||||||||||||||| | || || |||||| ||||| ||||| || ||| Sbjct 84463 GAGTCTAACGACACCATCGAGAATGTGAAGTCAAAGATCCAAGACAAGGAAGGTATTCCT 84404 Query 24102 CCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC 24161 || |||||||| ||| |||||| | || |||||| | || |||| ||||| | Sbjct 84403 CCAGATCAACAAAGATTGATTTTTGCTGGTAAGCAATTGGAGGATGGCAGAACATTGTCT 84344 Query 24162 GATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 || || ||||||||||| ||||| || | || || || || ||||||||||| || Sbjct 84343 GACTACAACATTCAAAAGGAATCCACTCTCCACTTGGTCTTGAGATTGAGAGGTGG 84288 >seq38 Length=237352 Score = 100 bits (110), Expect = 2e-16 Identities = 158/224 (71%), Gaps = 2/224 (1%) Strand=Plus/Minus Query 23986 ACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGG 24045 ||||||||||| | || || |||||| | || || | | | || || | || || ||| Sbjct 109524 ACAAAATGCAATTATTCGTTAAAACACTTACAGGTAGAACAATCACATTGGATGTTGAGT 109465 Query 24046 CCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCG 24105 |||| ||| | || ||| | || ||||| || || || || || |||||||| || | | Sbjct 109464 CCAATGACTCGATTGAGAATGTTAAACAGAAAATCACAGATAAGGAAGGCATTCCAGCTG 109405 Query 24106 ATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GAT 24164 ||||||| | ||||||| | || || ||| | || |||| || ||| | | | ||| Sbjct 109404 ATCAACAACGTTTGATTTATGCTGGAAAACAATTAGAGGATGGAAG-AACTTTATCGGAT 109346 Query 24165 TATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATT 24208 || || | ||||| || |||| |||| || ||||| ||||| Sbjct 109345 TACAATGTACAAAAGGATGCTACTCTTCACTTGGTGTTGAGATT 109302 Score = 96.9 bits (106), Expect = 3e-15 Identities = 167/243 (69%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| | ||| |||||||||||| | || || | || | ||| || Sbjct 109291 ATGCAACTCTTTGTGAGAACTTTAACTGGAAAAACAATCACTTTGGAGGCAGAGATGAAT 109232 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| || ||| || || |||||| || || || || || ||| | |||||| Sbjct 109231 GACACTATTGAGAGTGTAAAGAGTAAGATTTTTGAAAAGGATGGTATTCCTTCGGATCAA 109172 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || ||| | || | | || |||||| | || |||| |||| | ||||| || ||| Sbjct 109171 CAAAGAATTATCTTTGCTGGTAAGCAATTGGAGGATGGAAGAACTTTGAGCGACTACAAC 109112 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGACTATAATGATTC 24230 |||||||| || || || | || || || || ||| | ||||| ||| | ||| |||| Sbjct 109111 ATTCAAAAGGATTCCACTCTACACTTGGTTTTGAGACTCAGAGGTGGAATGCAATTATTC 109052 Query 24231 TTC 24233 || Sbjct 109051 GTC 109049 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429932992328970