Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq38 123 2e-23 seq26 122 6e-23 seq82 114 9e-21 seq42 113 3e-20 seq120 102 5e-17 seq76 100 2e-16 seq29 98.7 7e-16 >seq38 Length=237352 Score = 123 bits (136), Expect = 2e-23 Identities = 169/234 (72%), Gaps = 4/234 (2%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | || | ||||||||| |||||||| |||||||| | ||||||||| | Sbjct 109291 TACCACCACGTAATCTCAACACCAAGTGAAGAGTAGCATCCTTTTGTACATTGTAATCCG 109350 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | ||| | | | || |||||||||||||| ||| | || | ||||||||||| | | Sbjct 109351 ATAAAGTTCTTCCATCCTCTAATTGTTTTCCAGCATAAATCAAACGTTGTTGATCAGCTG 109410 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGA--CAGTATCTCCACTTTC 38266 | | |||||| || || | ||||| || || ||||||| | ||| | || || Sbjct 109411 GAATGCCTTCCTTATCTGTGATTTTCTGTTTAACATTCTCAATCGAGTCATTGGAC--TC 109468 Query 38267 AACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 ||| || ||||| || ||| |||| || | ||||| ||||||| ||||| || Sbjct 109469 AACATCCAATGTGATTGTTCTACCTGTAAGTGTTTTAACGAATAATTGCATTTT 109522 Score = 86.0 bits (94), Expect = 4e-12 Identities = 161/233 (69%), Gaps = 3/233 (1%) Strand=Plus/Plus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| |||||||| | | ||| ||||| || |||||| ||||||||||| ||||| | Sbjct 109061 CATT-CCACCTCTGAGTCTCAAAACCAAGTGTAGAGTGGAATCCTTTTGAATGTTGTAGT 109119 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 | |||| | | | || || ||||| || || ||||| || | | ||||||||| | Sbjct 109120 CGCTCAAAGTTCTTCCATCCTCCAATTGCTTACCAGCAAAGATAATTCTTTGTTGATCCG 109179 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATC-TCCACTT 38264 | || | || || || || | ||| || ||| ||| ||| | ||| || | || | Sbjct 109180 AAGGAATACCATCCTTTTCAAAAATCTTACTCTTTACACTCTCAATAGTGTCATTCA-TC 109238 Query 38265 TCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || | || || || || ||||| || || || ||| |||| || | ||||| Sbjct 109239 TCTGCCTCCAAAGTGATTGTTTTTCCAGTTAAAGTTCTCACAAAGAGTTGCAT 109291 >seq26 Length=133099 Score = 122 bits (134), Expect = 6e-23 Identities = 168/233 (72%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 ||| || ||||| | |||||||||||| | || ||||| |||| |||||||||| Sbjct 73289 ACCTCCCCTCAATCTCAACACCAAATGCAAGGTAGAATCCTTCTGAACGCTGTAATCAGA 73230 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 ||| | | | || |||||||||||||| || || || | ||||||||||||| || Sbjct 73229 CAAGGTTCTTCCATCCTCTAATTGTTTTCCTGCGAAAATCAATCGTTGTTGATCGGCTGG 73170 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGA--CAGTATCTCCACTTTCA 38267 | ||||| || || ||||| ||| || |||| || ||| | || || Sbjct 73169 AATCCCTTCCTTATCGGCTATTTTGCTCTTGACGTTCTCGATCGAGTCATTGGAC--TCT 73112 Query 38268 ACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 ||||| || ||||| || ||||| |||||||||||||| || || |||||||| Sbjct 73111 ACTTCCAAGGTAATGGTCTTACCAGTCAAGGTTTTCACAAAGATTTGCATGTT 73059 >seq82 Length=211372 Score = 114 bits (126), Expect = 9e-21 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 ||| |||||||| | ||| ||||| || | || ||||||||||| ||||| ||||| Sbjct 147705 ACCTCCTCTCAATCTCAAGACCAAGTGCAATGTAGATTCCTTTTGAATGTTGTAGTCAGA 147764 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 ||| | | || || ||||| ||||||||||| || | | ||||||||| | || Sbjct 147765 CAAGGTTCTGCCATCTTCCAATTGCTTTCCGGCAAAGATCAATCTTTGTTGATCTGGAGG 147824 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 | ||||| ||||| ||| ||| ||| ||||||| || || || ||| || Sbjct 147825 AATACCTTCCTTGTCTTGAATCTTTGACTTGACATTCTCGATGGTGTCGTTGGATTCGAC 147884 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || || || || ||||| |||||||| || ||||| || ||||| Sbjct 147885 CTCCAAAGTGATGGTCTTACCGGTCAAGGTCTTAACGAAAATTTGCAT 147932 >seq42 Length=292872 Score = 113 bits (124), Expect = 3e-20 Identities = 166/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||||||||| | ||| ||||| || |||||| |||||||| || ||||| || | Sbjct 165712 TACCACCTCTCAATCTCAAGACCAAGTGGAGAGTGGATTCCTTTTGGATGTTGTAGTCGG 165653 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 |||| | | |||| || |||||||| || ||||| || | ||||||||||| | | Sbjct 165652 ACAAGGTTCTTCCGTCTTCCAATTGTTTACCAGCAAAAATCAAACGTTGTTGATCAGGTG 165593 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | ||||| ||||| || || ||||| |||| | || || ||| | Sbjct 165592 GAATTCCTTCCTTGTCTTGGATCTTGCTTTTCACGTTCTCAATCGTGTCGTTGGATTCGA 165533 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTTTA 38323 |||| | || ||||| ||||| || | ||| || ||||| || ||||| || || Sbjct 165532 CTTCGAGAGTGATAGTCTTACCAGTGAGGGTCTTGACGAAGATTTGCATCTTGTA 165478 Score = 109 bits (120), Expect = 4e-19 Identities = 164/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||||||||| | | ||| ||||| || | || || |||||||| |||||||||| Sbjct 165940 TACCACCTCTGAGTCTCAAAACCAAGTGCAATGTTGATTCTTTTTGAATGTTGTAATCAG 165881 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 |||| | | |||| |||||||| ||||||||||| || || | |||||| || | | Sbjct 165880 ACAAGGTTCTTCCGTCTTCTAATTGCTTTCCGGCAAAGATGAGTCTTTGTTGGTCTGGTG 165821 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATC--TCCACTTTC 38266 | | ||||| ||||| || ||| || || || | | ||||| | || || Sbjct 165820 GAATTCCTTCCTTGTCTTGGATCTTTGATTTAACGTTTTCAATGGTATCATTGGAC--TC 165763 Query 38267 AACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||| || | ||||| || || || ||||||||||| ||||| || ||||| Sbjct 165762 AACCTCAAGAGTAATGGTCTTTCCGGTCAAGGTTTTAACGAAGATTTGCAT 165712 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 38127 TCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAAT 38186 ||||||||||| ||||| || || | | | | |||| || |||||||| || ||||| Sbjct 166130 TCCTTTTGAATGTTGTAGTCGGAGAGAGTTCTTCCGTCTTCCAATTGTTTACCAGCAAAA 166071 Query 38187 ATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTC 38246 || | ||||||||||| | || | ||||| || || ||| || |||||| || Sbjct 166070 ATCAAACGTTGTTGATCTGGTGGAATACCTTCCTTATCTTGAATCTTGCTCTTCACGTTT 166011 Query 38247 TGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACG 38306 | || || || ||||||||| || ||||| || ||||| || | ||| || ||| Sbjct 166010 TCGATGGTGTCGTTGGATTCAACTTCCAAAGTAATTGTCTTACCAGTGAGGGTCTTGACG 165951 Query 38307 AATATCTGCAT 38317 || || ||||| Sbjct 165950 AAGATTTGCAT 165940 >seq120 Length=320511 Score = 102 bits (112), Expect = 5e-17 Identities = 165/236 (70%), Gaps = 1/236 (0%) Strand=Plus/Plus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| ||||||||||| | || ||||||||||| || |||||||||| ||||| | Sbjct 60813 CATT-CCACCTCTCAATCTTAAGACCAAATGAAGGGTAGCATCCTTTTGAACGTTGTAGT 60871 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 |||| | | | | || || ||||| || || ||| | || | || |||||||| | Sbjct 60872 CAGAGAGTGTTCTTCCATCCTCCAATTGCTTGCCTGCATAGATCAAACGCTGTTGATCAG 60931 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 || | ||||| || || | ||||| ||||||||||| | | || | | Sbjct 60932 CTGGAATTCCTTCCTTATCTGTGATTTTGCTCTTCACATTCTCAATCGAGTCATTAGACT 60991 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTT 38321 |||| || ||||| |||||| |||| || | ||||| || |||| ||||||||| Sbjct 60992 CAACCTCCAATGTGATAGTTCTACCAGTGAGTGTTTTGACAAATAGTTGCATGTTT 61047 Score = 86.0 bits (94), Expect = 4e-12 Identities = 136/193 (70%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 38127 TCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAAT 38186 || ||||| | ||||||||||| | | | | || || |||||||| || || | Sbjct 60625 TCTTTTTGCAAGTTGTAATCAGAGATTGTTCTTCCATCCTCCAATTGTTTGCCAGCGTAA 60684 Query 38187 ATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTC 38246 |||| ||||||||||||| || | || ||||| || |||||| |||||||||| Sbjct 60685 ATTAAACGTTGTTGATCGGCTGGAATTCCCTCTTTATCAGCAATTTTGCTCTTCACATTC 60744 Query 38247 TGGA--CAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCA 38304 | | ||| | || || ||||| ||||| |||||||| || || |||||||||| Sbjct 60745 TCAATCGAGTCGTTGGAC--TCTACTTCCAATGTGATAGTTTTTCCAGTTAAGGTTTTCA 60802 Query 38305 CGAATATCTGCAT 38317 | || | ||||| Sbjct 60803 CAAACAATTGCAT 60815 >seq76 Length=223365 Score = 100 bits (110), Expect = 2e-16 Identities = 120/163 (74%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 38088 TTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCA 38147 |||||||||||||| | ||| ||||| || |||||| ||||||||||| ||||| ||| Sbjct 84285 TTACCACCTCTCAATCTCAAGACCAAGTGGAGAGTGGATTCCTTTTGAATGTTGTAGTCA 84344 Query 38148 GACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAG 38207 ||||| | | || || ||||| || || ||||| || | | ||||||||| | Sbjct 84345 GACAATGTTCTGCCATCCTCCAATTGCTTACCAGCAAAAATCAATCTTTGTTGATCTGGA 84404 Query 38208 GGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGA 38250 || | ||||| ||||| || ||| ||||||||||| || Sbjct 84405 GGAATACCTTCCTTGTCTTGGATCTTTGACTTCACATTCTCGA 84447 >seq29 Length=427163 Score = 98.7 bits (108), Expect = 7e-16 Identities = 161/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||||||||| | | | || | || |||||| ||||||||||| ||||| || | Sbjct 48783 TACCACCTCTGAGTCTGAGGACAAGGTGGAGAGTGGATTCCTTTTGAATGTTGTAGTCGG 48724 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 |||| | | | || |||||||| ||||||||||| || || | ||||||||| | | Sbjct 48723 ACAAGGTTCTTCCATCTTCTAATTGCTTTCCGGCAAAGATGAGTCTTTGTTGATCAGGTG 48664 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | ||||| ||||| || || ||||| |||| || || || ||| | Sbjct 48663 GAATTCCTTCCTTGTCTTGGATCTTGCTTTTCACGTTCTCGATTGTGTCGTTGGATTCGA 48604 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 |||| | || ||||| || || || || || || ||||| || |||||||| Sbjct 48603 CTTCAAGAGTGATAGTCTTGCCAGTTAAAGTCTTGACGAAGATTTGCATGTT 48552 Score = 95.1 bits (104), Expect = 8e-15 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 38088 TTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCA 38147 ||||||||||| || | || || | |||||||| |||||||| || |||||||| Sbjct 49278 TTACCACCTCTTAATCTCAGAACAAGGTGAAGAGTTGATTCCTTTTGGATGTTGTAATCG 49219 Query 38148 GACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAG 38207 || | | | || || ||||| || || || || || | ||||||||||| | Sbjct 49218 GAAAGGGTTCTGCCATCTTCCAATTGCTTACCAGCGAAAATCAAACGTTGTTGATCTGGT 49159 Query 38208 GGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCA 38267 || | || || || || ||| ||| ||| || |||| || || || | |||| Sbjct 49158 GGAATCCCCTCCTTATCTTGAATCTTTGACTTGACGTTCTCGATTGTGTCGTTAGATTCA 49099 Query 38268 ACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||||| || || || || || || ||||| ||||||||||| || ||||| Sbjct 49098 ACTTCCAAAGTGATGGTCTTTCCTGTCAAAGTTTTCACGAAAATTTGCAT 49049 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334944856834994