Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq36 228 1e-54 seq93 190 3e-43 seq40 86.0 8e-12 >seq36 Length=122865 Score = 228 bits (252), Expect = 1e-54 Identities = 825/1276 (65%), Gaps = 26/1276 (2%) Strand=Plus/Plus Query 62425 TCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGC 62484 |||| ||| || || || |||||||| ||| || | ||||||||| || ||||| Sbjct 115109 TCCTTGATAGGTCTCATAAGGTCCTTCTGTCTTGGCAACTTCACAACTGGCTGTCAATGC 115168 Query 62485 ACCGTAATAAATGGTTTCGAAGATCTTCTTATTT--AGATCTTGCGCTTCCAGGCTATCA 62542 | | |||| || |||||||| || |||| || | |||||| ||||| || || Sbjct 115169 AGCAAAATATATTGTTTCGAAAAT-TTCTCGATTCAAAATCTTG-GCTTCTTCACTCTCG 115226 Query 62543 AATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGT 62602 || ||| || | ||||| || || || ||||| |||||||| | ||| || || Sbjct 115227 AAGGGAAGATGCATCTTGATAAAGGCATCGGCCAATCCCTGAACACCCAAACCAATGGGA 115286 Query 62603 CTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATT 62662 | ||||||| ||||| || |||||| || ||||||||||| | || || || Sbjct 115287 CGATGTCTCATATTACTCTTTCTAGCTTCCTCAACTGGATAATAATTCTTGTCAATGATC 115346 Query 62663 TTATTGAGATTTCTGA---CAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAAT 62719 || || | ||| || ||||| ||||| | || || || | ||| | Sbjct 115347 TTGTTCAAATTCTTGGTGGCAATT---TTGACAATTTCAAACAATTGTTCATGATCGTAG 115403 Query 62720 CGCC----CATCT-ATT-ACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCT 62773 | | ||| ||| ||| || | | ||||| | ||||| ||||| || ||| Sbjct 115404 GTACGTGTCGTCTCATTGACATACTTTGGAAGTGCAATACTTGCCAAGTTACACACAGCT 115463 Query 62774 ACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTT 62833 || |||| | | | | |||| || || ||||| || | || | ||||| ||| Sbjct 115464 ACTTCATCTGGAGCTGTGTATTCAATAATTTCAGTACACAAGTTGGAGGATTTGATCGTT 115523 Query 62834 CCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTA 62893 || | |||||||||||| ||| | ||||| |||||||||||||| ||| | ||| | Sbjct 115524 CCAAGATTTTGTTGATTTGATTTTCTATTACATGCATCCTTATAAAGCATGTAAGGAACA 115583 Query 62894 CCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATA-GA 62952 ||||| ||||| || | || ||||| || ||| | || |||| | | | | Sbjct 115584 CCAGTCTCAATTTGTGCCTCAATAATTGCAAACCAAAGCTCTTGAGCACGAACGACACGG 115643 Query 62953 TTTGTATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAAC 63012 || | | | || | || || | ||||||| | ||||| || ||||| || Sbjct 115644 CGTGCACGACCCTCCT-TCTCATAACGCAAATACAATTCATTAAACTCTTCACCCCACAC 115702 Query 63013 ATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCAC 63072 || | ||||||||| ||||| ||||| | | ||||| | || |||||||| Sbjct 115703 ATCAGCAAGTCCAGGAGCTTCATTAGGACAAAAGAGTGACCAATGAGAATCCTCCTTCAC 115762 Query 63073 TCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTC 63132 || | |||||| | |||| | ||| | | | | ||| | ||||| | || | ||| Sbjct 115763 TCTCTCCATAAACAAATCATTCACCCACAAACCCAAAAACAAATCTCGAGCTCGAATTTC 115822 Query 63133 CTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTC 63192 ||| ||||| ||||||||| | | ||| | || | | |||||| |||||||| || || Sbjct 115823 CTCCTTTCCAGTATTCTTTCTCAAATCTAAAAAATCAAAAATATCGGAATGCCAAGGCTC 115882 Query 63193 CAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGT 63252 ||| || | ||| | |||| ||||| || || ||||| | ||| | || || Sbjct 115883 CAAATAAACGGCAAAGGCTCCTTTTCGTTTACCACCACCTTGATCCACGTAACGGGCAGT 115942 Query 63253 GTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGAT 63312 || || | || | | ||| ||||| | |||||||| || || ||||| ||| || Sbjct 115943 GTCGTTGAATACACGAAGCATGGGAATGAGTCCATTGGAGGTTCCGTTGGTTCCTCGAAT 116002 Query 63313 ATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGA 63372 ||| |||| ||||||||| ||| || || | || || || || || | || || Sbjct 116003 GTAGGATCCAGAGGCACGAATGTTATGAACGGACAAGCCGATACCACCAGCACTCTTGGA 116062 Query 63373 GATTAATGCGCATCGT-TTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGT 63431 || || || || ||| || | ||||| || || || || ||| || ||||| Sbjct 116063 TATCAAGGCACA-CGTCTTGAGTGTATCGTAAATACCTGAAATGGAATCGTCTTTCATGG 116121 Query 63432 TAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAG 63491 | || || || | |||||| || ||| || ||||| || | ||||||| Sbjct 116122 CCACTAAGAAGCAAGAACTCATTTGAGGAGTGGGAGTACCAGCATTGAAGAGAGTAGGAG 116181 Query 63492 AAGCGTGAGTAAACCATTTTTCAG---AAAGTAGATTGTACGTCTCAATAGCTGAGTCTA 63548 | ||||| | ||| | ||| ||||| | ||| || |||||||| || | Sbjct 116182 AGGCGTGGATGAAC---ATACCAGTGCTAAGTAATTCGTAGGTTTCAATAGCCTTCTCAA 116238 Query 63549 TATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGA 63608 |||| | |||||| || | |||||||| |||||||| ||||||| ||| | | Sbjct 116239 TATCGGAACCATGAATGCCCAAACTCACACGCATGAACATGTGTTGAGGTCGTTCGGCAA 116298 Query 63609 TCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGT 63668 | | | ||| | ||||||| | |||| | ||| ||||| ||||| || | | Sbjct 116299 TAACATCTCCGAGTTTGAGCAAGTAGCTTCTTTCAAGAGTCTTAAAGCCAAAGTAATCGA 116358 Query 63669 ATGAAAAGTCTCGTTC 63684 || | | |||||||| Sbjct 116359 ATTGATAATCTCGTTC 116374 >seq93 Length=103736 Score = 190 bits (210), Expect = 3e-43 Identities = 395/583 (68%), Gaps = 4/583 (1%) Strand=Plus/Plus Query 32675 GTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 32734 ||||| || || |||| | ||| ||||| ||||| || || | ||| ||||| | || Sbjct 84881 GTGTAATCCTTCATCTCGAGAAATCAATTCATTGGAGAAGGTCAATCCAGGCATCAAACC 84940 Query 32735 ACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGC 32794 | ||| || | |||||| ||||| || |||||| |||||| || ||||| || Sbjct 84941 TCTCTTCTTCATCCAAAAGATGGAACAGAAAGATCCACTAAAGAAGATACCTTCCACACA 85000 Query 32795 CGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGT-ATCCACTTTTGAGCCC 32853 ||||||||||| | || || || ||| | | | | ||||| || ||||| Sbjct 85001 AGCAAAGGCAATCAATCGTTCAGCA-AACAAGTTATCCGAGTTGATCCATTTCAAAGCCC 85059 Query 32854 AATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGttttttt 32913 || |||||||||| || | || | || || || ||||| |||||| | | ||| Sbjct 85060 AACGAGCCTTCTTTTGAACGGATGGAACAGTATCAATGGCATTGAAGAGACGATGTCTTT 85119 Query 32914 CATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTT 32973 | | | || |||| || || ||||| | | |||||| || | |||||| || | Sbjct 85120 CTCTCGTGTCCTTAATGTAGGTTTCAATTAGAGTTGAATACATCTCTGCATGAATATTCT 85179 Query 32974 CAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTACAAA 33033 ||||||| ||||| ||||| ||||| ||||| || || | ||| || ||||| | || Sbjct 85180 CAATGGCAATTTGGAATCCATAGAAACATCTGGCTTCAGGAATTTGAACTTCAGCCATAA 85239 Query 33034 ATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACAT 33093 || ||| || || |||||||| || || || ||| ||||| || ||||| ||| Sbjct 85240 ATTGTTGACACAAGTTCTCATTCACAATACCATCGGAGGCAGCAAAGAAGGCCAAAACAG 85299 Query 33094 GTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTATTCCAATCATTGATATCTTTAGAT 33152 || || || | || ||| | |||| || || | | ||| | | |||||| | Sbjct 85300 TCTTGATGAAGTGTTGTTCAT-TGGTATTGAGAGTTTCCCATTGAGCAATATCTGTGTGG 85358 Query 33153 ATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATG 33212 | |||||||||||| | ||||| || |||||| ||||| || ||||| | ||| | Sbjct 85359 AGATCCACTTCTTCAGCAGTCCAGAAAGATGCCATGGCCTTCTTGTACATCTCCCAAACC 85418 Query 33213 TCATGATATTGAATTGGAAAAATAACAAATCTATTTGGATTTT 33255 | |||| || ||||| || | ||| || | || |||||||| Sbjct 85419 TTTTGATGTTCGATTGGGAAGAGAACGAAACGATGTGGATTTT 85461 >seq40 Length=471424 Score = 86.0 bits (94), Expect = 8e-12 Identities = 152/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 80784 GTGATAGGTATTGATGAAGGACAGTTCTTTCCAGACATTGTTGAATTCTGTG-AGCGTAT 80842 || || || ||||||||||| || |||||||| || | ||||| || |||| ||| | Sbjct 411274 GTCATTGGAATTGATGAAGGTCAATTCTTTCCTGATTTAGTTGACTTTTGTGAAGCAGCT 411333 Query 80843 GGCAAACGAAGGAAAAATAGTTATAGTAGCCGCACTCGATGGTACATTTCAACGTAAACC 80902 ||||| | ||| ||||| || || || ||| | ||||| || || ||| | ||||| Sbjct 411334 -GCAAATGGAGGTAAAATTGTGATTGTGAGCGCCTTGGATGGAACTTTCCAAAGAAAACC 411392 Query 80903 GTTTAATAATATCTTGGATCTTATTCCATTATCTGAAATGGTGGTAAAACTAACTGCAGT 80962 ||| | | ||||| | | |||||| | |||||| || || ||| | | || || Sbjct 411393 TTTTGGTGACGTCTTGCGTTTGATTCCAATGGCTGAAAGTGTTGTGAAATTGAAGGCTGT 411452 Query 80963 GTGTATGAAATGCTTTAAGGAGGCTTCCTTTTCTAAACG 81001 || ||| |||| || || ||| | ||| ||||||| Sbjct 411453 TTGCATGGTTTGCTGCAAAGATGCTGCTTTTACTAAACG 411491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633627453690400