Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq29 125 6e-24 seq82 116 3e-21 seq42 113 4e-20 seq26 107 2e-18 seq38 105 6e-18 seq120 95.1 1e-14 seq151 87.8 2e-12 >seq29 Length=427163 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || |||||||| || || || | ||||| | ||||| || || Sbjct 48555 ATGCAAATCTTCGTCAAGACTTTAACTGGCAAGACTATCACTCTTGAAGTCGAATCCAAC 48614 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| |||| || ||| ||||| ||||| ||||||||||| ||| Sbjct 48615 GACACAATCGAGAACGTGAAAAGCAAGATCCAAGACAAGGAAGGAATTCCACCTGATCAA 48674 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || | | || |||||||| || ||||||||||||| | || || ||| ||||| Sbjct 48675 CAAAGACTCATCTTTGCCGGAAAGCAATTAGAAGATGGAAGAACCTTGTCCGACTACAAC 48734 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||||||| |||||||| || || | || || || || ||||| || Sbjct 48735 ATTCAAAAGGAATCCACTCTCCACCTTGTCCTCAGACTCAGAGGTGG 48781 Score = 114 bits (126), Expect = 1e-20 Identities = 168/235 (71%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| || || || |||||||| || || ||||||| | ||||| || || Sbjct 49048 AATGCAAATTTTCGTGAAAACTTTGACAGGAAAGACCATCACTTTGGAAGTTGAATCTAA 49107 Query 25058 TGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| |||||| | ||| |||| | ||| || || || ||||||||||| || | Sbjct 49108 CGACACAATCGAGAACGTCAAGTCAAAGATTCAA-GATAAGGAGGGGATTCCACCAGATC 49166 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 |||| || | ||||| || || || ||||| ||||||| | || | |||||||| Sbjct 49167 AACAACGTTTGATTTTCGCTGGTAAGCAATTGGAAGATGGCAGAACCCTTTCCGATTACA 49226 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAATTA 25231 | || ||||| ||||| || || || | || || || ||||||| || || || Sbjct 49227 ACATCCAAAAGGAATCAACTCTTCACCTTGTTCTGAGATTAAGAGGTGGTAACTA 49281 >seq82 Length=211372 Score = 116 bits (128), Expect = 3e-21 Identities = 166/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055 ||||||||||| || || ||||| ||||||||||| ||||||| | || || || || Sbjct 147935 ACAATGCAAATTTTCGTTAAGACCTTGACCGGTAAGACCATCACTTTGGAGGTCGAATCC 147876 Query 25056 TCTGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| |||||| | ||| |||| | ||| ||||| ||||| ||||| || || Sbjct 147875 AACGACACCATCGAGAATGTCAAGTCAAAGATTCA-AGACAAGGAAGGTATTCCTCCAGA 147817 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||||| | | || |||||||| || ||||| ||||||| | || || || || Sbjct 147816 TCAACAAAGATTGATCTTTGCCGGAAAGCAATTGGAAGATGGCAGAACCTTGTCTGACTA 147757 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||| |||||||| ||||| || | || || || | || | |||||||| Sbjct 147756 CAACATTCAAAAGGAATCTACATTGCACTTGGTCTTGAGATTGAGAGGAGG 147706 >seq42 Length=292872 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| | || ||||| | ||||| ||||||| || || Sbjct 165484 ATGCAAATCTTCGTCAAGACCCTCACTGGTAAGACTATCACTCTCGAAGTCGAATCCAAC 165543 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| |||| || ||| ||||| ||||| ||||||||||| ||| Sbjct 165544 GACACGATTGAGAACGTGAAAAGCAAGATCCAAGACAAGGAAGGAATTCCACCTGATCAA 165603 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | |||||||| || |||||||| ||||| | | || || ||| ||||| Sbjct 165604 CAACGTTTGATTTTTGCTGGTAAACAATTGGAAGACGGAAGAACCTTGTCCGACTACAAC 165663 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || ||||| |||||||| || || || || | || | ||||| || Sbjct 165664 ATCCAAAAGGAATCCACTCTCCACTTGGTCTTGAGATTGAGAGGTGG 165710 Score = 111 bits (122), Expect = 1e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| ||||| || |||||||| || || |||| ||| | ||||| || || Sbjct 166167 AATGCAAATCTTTGTTAAAACTTTGACTGGCAAGACCATTACATTGGAAGTCGAATCCAA 166226 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||| || |||||| | ||| ||| ||| || || ||||| ||||| || ||||| Sbjct 166227 TGATACCATCGAGAATGTCAAGTCAAAGATCCAAGATAAGGAAGGCATTCCTCCAGACCA 166286 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| | | ||||| || || || ||||| ||||||| | || | ||||||||| Sbjct 166287 ACAAAGATTGATTTTCGCTGGTAAGCAATTGGAAGATGGAAGAACCCTCTCCGATTACAA 166346 Query 25178 TATTCAAAAAGAATCCACGCTACA 25201 ||||||||||| || || || || Sbjct 166347 CATTCAAAAAGAGTCTACTCTTCA 166370 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || || || |||||||| || |||| || | || || ||||| | Sbjct 165712 ATGCAAATCTTCGTTAAAACCTTGACCGGAAAGACCATTACTCTTGAGGTTGAGTCCAAT 165771 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || || || || | || ||| ||| ||||| ||||| |||||||| |||||| Sbjct 165772 GATACCATTGAAAACGTTAAATCAAAGATCCAAGACAAGGAAGGAATTCCACCAGACCAA 165831 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || | | || |||||||| || ||||||||||| | | || || |||||||| Sbjct 165832 CAAAGACTCATCTTTGCCGGAAAGCAATTAGAAGACGGAAGAACCTTGTCTGATTACAAC 165891 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||||||||||||| || | || || || | || || ||||| || Sbjct 165892 ATTCAAAAAGAATCAACATTGCACTTGGTTTTGAGACTCAGAGGTGG 165938 >seq26 Length=133099 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| || || ||||| ||||| |||| || | ||||| ||||| | Sbjct 73062 ATGCAAATCTTTGTGAAAACCTTGACTGGTAAGACCATTACCTTGGAAGTAGAGTCCAAT 73121 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||| | |||||| | ||| ||||| | || || |||||||||||| | || ||| Sbjct 73122 GACTCGATCGAGAACGTCAAGAGCAAAATAGCCGATAAGGAAGGGATTCCAGCCGATCAA 73181 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | ||||| || || ||||||||||| |||| | || || ||||||| Sbjct 73182 CAACGATTGATTTTCGCAGGAAAACAATTAGAGGATGGAAGAACCTTGTCTGATTACAGC 73241 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||| || || || || | ||||| ||| | || | || ||||| Sbjct 73242 GTTCAGAAGGATTCTACCTTGCATTTGGTGTTGAGATTGAGGGGAGG 73288 >seq38 Length=237352 Score = 105 bits (116), Expect = 6e-18 Identities = 150/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||| |||| || || || | || |||| | | |||||| | || || ||||| Sbjct 109520 AATGCAATTATTCGTTAAAACACTTACAGGTAGAACAATCACATTGGATGTTGAGTCCAA 109461 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 |||| | || ||| | || || |||||||| || || ||||| |||||| |||| || Sbjct 109460 TGACTCGATTGAGAATGTTAAACAGAAAATCACAGATAAGGAAGGCATTCCAGCTGATCA 109401 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | |||| ||| || ||||||||||| |||| | ||| | |||||||| Sbjct 109400 ACAACGTTTGATTTATGCTGGAAAACAATTAGAGGATGGAAGAACTTTATCGGATTACAA 109341 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTG 25208 | | ||||| || | || || || || ||| Sbjct 109340 TGTACAAAAGGATGCTACTCTTCACTTGGTG 109310 >seq120 Length=320511 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||| | ||||| || || || || || ||| | |||||| | ||||| ||||| Sbjct 60816 AATGCAATTGTTTGTGAAAACCTTAACTGGAAAAACTATCACATTGGAAGTAGAGTCCAA 60757 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||| | || ||| ||||| ||||| |||| ||||| || |||||| | || || Sbjct 60756 CGACTCGATTGAGAATGTGAAGAGCAAAATTGCTGATAAAGAGGGAATTCCAGCCGATCA 60697 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | |||| || ||||||||||| || |||| | || | |||||||| Sbjct 60696 ACAACGTTTAATTTACGCTGGCAAACAATTGGAGGATGGAAGAACAATCTCTGATTACAA 60637 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 | |||||||| || || | || | ||| | || || | ||||||| Sbjct 60636 CTTGCAAAAAGATTCGACCATTCACCTTGTGTTGAGACTTCGTGGAGGAA 60587 >seq151 Length=76492 Score = 87.8 bits (96), Expect = 2e-12 Identities = 174/255 (68%), Gaps = 2/255 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||| |||| || ||||||||||| || || ||||||| | |||| ||||| | Sbjct 51037 ATGCAATTATTCGTCAAGACTTTGACAGGAAAGACCATCACGATTGAAGCAGAGTCCAAT 51096 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||| | || ||| ||||| ||| || ||| || ||||| |||||| | || ||| Sbjct 51097 GACTCGATTGAGAACGTGAAGAGAAAGATTTGTGATAAGGAAGGTATTCCAGCGGATCAA 51156 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | |||| || || |||||||| || |||| | || || || || | Sbjct 51157 CAACGTTTAATTTACGCTGGAAAACAATTGGAGGATGGAAGAACAGTTTCTGACTATAGC 51216 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAATTA-TTAT-A 25236 | |||||||| || || | ||| | || | || || |||||||| | | || | | Sbjct 51217 TTGCAAAAAGATTCAACTATCCATCTTGTTTTGAGACTGCGAGGAGGAGTTGACTTGTAA 51276 Query 25237 CTATTAACAAATAAA 25251 |||| | ||||||| Sbjct 51277 ATATTGAAAAATAAA 51291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433324968599810