Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq93 221 1e-52 >seq93 Length=103736 Score = 221 bits (244), Expect = 1e-52 Identities = 605/908 (67%), Gaps = 38/908 (4%) Strand=Plus/Plus Query 92809 TATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATCGAATTCA-- 92866 ||||| |||||| | || |||||||| || ||||| || || || ||| ||||| Sbjct 84579 TATTCACCAACTCTCTTCTCAAAGAAGTTCGTCTTACCAGACACTGAAATCATATTCATC 84638 Query 92867 CTAGTGATTGGATTCTTGGCGTTATAATACTTTTCACCGATCAACTCGT-ACAA-TAATC 92924 | | || |||||| | | | ||| ||| ||| ||| ||| |||| ||||| Sbjct 84639 CAATCGAATGGATTTTGGACAAGGTAAACCTTATCAT--ATCCTATCGAGACAAGTAATC 84696 Query 92925 TATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAG-AAGACGT 92983 |||||| |||||||| ||||| || ||| | | | ||||||| || | ||| | Sbjct 84697 GATCAGCAACAAATTCAATGTATTGTTGCATGAGACGAGAATTCATACCAATCAAGTCC- 84755 Query 92984 ACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTCT 93043 ||||| |||| || | ||| || ||||| || |||| ||||| | | | Sbjct 84756 ACAGGGAGAGATTCTCGAATGAATTCCTTCTCAATCTCAACAGCTTCACTGACCA----- 84810 Query 93044 ATTACTCTACTA--TTTGGTGGT--TTTTGTAC----GA-CAT--AATTGTACATTAAGC 93092 || | | ||| | ||| | || ||| ||| || ||| ||| ||| | | Sbjct 84811 ATGAATGTACAACCTTTTGAGGCAATTTGGTATATTTGAGCATGGAAT---ACAAGAGAC 84867 Query 93093 ACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAAC 93152 | |||||||| || ||||| ||||| ||||| || ||||| |||||| ||| || || | Sbjct 84868 AAGCAAAGTCCGTGTGTAATCCTTCATCTCGAGAAATCAATTCATTGGAGAAGGTCAATC 84927 Query 93153 CTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTA 93212 | || | || |||| ||||| | |||||| || ||| ||| ||| ||| || | Sbjct 84928 CAGGCATCAAACCTCTCTTCTTCATCCAAAAGATGGAACAGAAAGATCCACTAAAGAAGA 84987 Query 93213 TACCTTCCACGGCTGCAAATGCCA-CAATACGTTCGGCAA--AATTTGCGGAATTACTGC 93269 |||||||||| ||||| || | |||| ||||| |||| || || || | Sbjct 84988 TACCTTCCACACAAGCAAAGGCAATCAAT-CGTTCAGCAAACAAGTT-----ATCCGAGT 85041 Query 93270 TGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGT 93329 |||||||||| ||||||||| || || || | || | || | || || || || | Sbjct 85042 TGATCCATTTCAAAGCCCAACGAGCCTTCTTTTGAACGGATGGAACAGTATCAATGGCAT 85101 Query 93330 TAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACA 93389 | || || || || || || || ||||| || || |||| ||||||| Sbjct 85102 TGAAGAGACGATGTCTTTCTCTCGTGTCCTTAATGTAGGTTTCAATTAGAGTTGAATACA 85161 Query 93390 TTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGA 93449 | || | ||| | |||||| || |||||||||||||| ||||||||||| ||||| | | Sbjct 85162 TCTCTGCATGAATATTCTCAATGGCAATTTGGAATCCATAGAAACATCTGGCTTCAGGAA 85221 Query 93450 TCTGCACTTC-TTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCT 93508 | || ||||| | ||| | | || || || ||||| || ||||||||||| || Sbjct 85222 TTTGAACTTCAGCCATAAATTGTTGACACAAG-TTCTCATTCACAATACCATCGGAGGCA 85280 Query 93509 GCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAA 93568 ||||| || ||||| | | ||| || || |||| |||| || || | ||||| Sbjct 85281 GCAAAGAAGGCCAAAACAGTCTTGATGAAGTGTTGTTCATTGGTATTGAGAGTTTCCCAT 85340 Query 93569 TCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTT 93628 | | | |||| | ||||| |||||||| ||||||| || ||||| || || Sbjct 85341 TGAGCAATATCTGTGTGGAGATCCACTTCTTCAGCAGTCCAGAAAGATGCCATGGCCTTC 85400 Query 93629 TTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTA 93688 |||||||| ||||| | | ||||| || ||||| || | || ||||||| || || Sbjct 85401 TTGTACATCTCCCAAACCTTTTGATGTTCGATTGGGAAGAGAACGAAACGATGTGGATTT 85460 Query 93689 TCTTTTAG 93696 || || || Sbjct 85461 TCCTTGAG 85468 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556856804523760