Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= NC_008520.2 Length=132239 Score E Sequences producing significant alignments: (Bits) Value seq120 100 2e-16 seq42 96.9 3e-15 seq82 89.7 4e-13 >seq120 Length=320511 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 111186 AATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111245 ||||||| | ||||| ||||| | || || ||||| || || ||||| || ||| Sbjct 60816 AATGCAATTGTTTGTGAAAACCTTAACTGGAAAAACTATCACATTGGAAGTAGAGTCCAA 60757 Query 111246 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111305 ||| || ||| | || || |||||||| || ||||| || |||| | |||||| Sbjct 60756 CGACTCGATTGAGAATGTGAAGAGCAAAATTGCTGATAAAGAGGGAATTCCAGCCGATCA 60697 Query 111306 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111365 |||| | | ||||| || |||||||||||||| ||| | ||| || | ||||| || Sbjct 60696 ACAACGTTTAATTTACGCTGGCAAACAATTGGAGGATGGAAGAACAATCTCTGATTACAA 60637 Query 111366 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 | |||||||| || || | || | |||||| | || || || || Sbjct 60636 CTTGCAAAAAGATTCGACCATTCACCTTGTGTTGAGACTTCGTGGAGG 60589 >seq42 Length=292872 Score = 96.9 bits (106), Expect = 3e-15 Identities = 169/244 (69%), Gaps = 4/244 (2%) Strand=Plus/Plus Query 111186 AATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111245 ||||||||| ||||| ||||| |||| ||||| |||||||| ||||| ||| ||| Sbjct 166167 AATGCAAATCTTTGTTAAAACTTTGACTGGCAAGACCATTACATTGGAAGTCGAATCCAA 166226 Query 111246 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111305 ||| | | | | || || ||| || || || |||||| |||| || || Sbjct 166227 TGATACCATCGAGAATGTCAAGTCAAAGATCCAAGATAAGGAAGGCATTCCTCCAGACCA 166286 Query 111306 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111365 |||||| | |||| || || || |||||||||||| | ||| | ||||||| || Sbjct 166287 ACAAAGATTGATTTTCGCTGGTAAGCAATTGGAAGATGGAAGAACCCTCTCCGATTACAA 166346 Query 111366 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG---CAA-TAAAT 111421 || |||||||| ||||| || || | || ||| | || | || || ||| ||||| Sbjct 166347 CATTCAAAAAGAGTCTACTCTTCACCTTGTTTTGAGATTGAGGGGAGGTTCCAATTAAAT 166406 Query 111422 AAAC 111425 |||| Sbjct 166407 AAAC 166410 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||| || || ||||| ||||||| || |||||||| | || || ||| Sbjct 165712 ATGCAAATCTTCGTTAAAACCTTGACCGGAAAGACCATTACTCTTGAGGTTGAGTCCAAT 165771 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| | ||| | || ||| ||| || ||||| ||||| |||| || ||| Sbjct 165772 GATACCATTGAAAACGTTAAATCAAAGATCCAAGACAAGGAAGGAATTCCACCAGACCAA 165831 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 ||||| || || | ||| || || ||||| ||||| | ||| || | ||||| || Sbjct 165832 CAAAGACTCATCTTTGCCGGAAAGCAATTAGAAGACGGAAGAACCTTGTCTGATTACAAC 165891 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || ||||||||||| ||| | || || || ||| | || | ||||| Sbjct 165892 ATTCAAAAAGAATCAACATTGCACTTGGTTTTGAGACTCAGAGGTGG 165938 >seq82 Length=211372 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 111186 AATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111245 |||||||||||| || || || ||||||| || ||||| || |||| ||| ||| Sbjct 147933 AATGCAAATTTTCGTTAAGACCTTGACCGGTAAGACCATCACTTTGGAGGTCGAATCCAA 147874 Query 111246 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111305 ||| | | | | || || ||| ||| ||||| ||||| |||| ||||| Sbjct 147873 CGACACCATCGAGAATGTCAAGTCAAAGATTCAAGACAAGGAAGGTATTCCTCCAGATCA 147814 Query 111306 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111365 |||||| | || | ||| || || |||||||||||| | ||| || | || || || Sbjct 147813 ACAAAGATTGATCTTTGCCGGAAAGCAATTGGAAGATGGCAGAACCTTGTCTGACTACAA 147754 Query 111366 TATACAAAAAGAATCTACACTACATTTAGTGTTG 111399 || ||||| ||||||||| | || || || ||| Sbjct 147753 CATTCAAAAGGAATCTACATTGCACTTGGTCTTG 147720 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 423037040570800