Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq82 163 2e-35 seq29 149 5e-31 seq42 147 2e-30 seq120 122 7e-23 seq26 113 4e-20 seq76 104 2e-17 seq66 98.7 8e-16 seq38 96.9 3e-15 seq151 89.7 4e-13 >seq82 Length=211372 Score = 163 bits (180), Expect = 2e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| ||||| || || |||||||| || ||||| | || || ||| ||| | Sbjct 147932 ATGCAAATTTTCGTTAAGACCTTGACCGGTAAGACCATCACTTTGGAGGTCGAATCCAAC 147873 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || |||| ||| |||||||||||||| |||||||| || |||||| Sbjct 147872 GACACCATCGAGAATGTCAAGTCAAAGATTCAAGACAAGGAAGGTATTCCTCCAGATCAA 147813 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | | || |||||||| || || || || ||| | | ||| | || || |||||| Sbjct 147812 CAAAGATTGATCTTTGCCGGAAAGCAATTGGAAGATGGCAGAACCTTGTCTGACTACAAC 147753 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 |||||||| ||||| || | || || || ||| ||||| | |||||| Sbjct 147752 ATTCAAAAGGAATCTACATTGCACTTGGTCTTGAGATTGAGAGGAGGT 147705 >seq29 Length=427163 Score = 149 bits (164), Expect = 5e-31 Identities = 153/200 (77%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || |||||||| || || || |||||||| || || || ||||||||||||| ||| || Sbjct 48552 AACATGCAAATCTTCGTCAAGACTTTAACTGGCAAGACTATCACTCTTGAAGTCGAATCC 48611 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | ||| || | || | | ||| || || ||||||||||| || |||||||| ||| Sbjct 48612 AACGACACAATCGAGAACGTGAAAAGCAAGATCCAAGACAAGGAAGGAATTCCACCTGAT 48671 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 |||||| | || || |||||||| || || ||||| ||| | ||| | ||||| ||| Sbjct 48672 CAACAAAGACTCATCTTTGCCGGAAAGCAATTAGAAGATGGAAGAACCTTGTCCGACTAC 48731 Query 22396 AACATTCAAAAAGAATCCAC 22415 ||||||||||| |||||||| Sbjct 48732 AACATTCAAAAGGAATCCAC 48751 Score = 141 bits (156), Expect = 8e-29 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || |||||||| || || || || ||||| | ||||| ||| | | | Sbjct 49049 ATGCAAATTTTCGTGAAAACTTTGACAGGAAAGACCATCACTTTGGAAGTTGAATCTAAC 49108 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | |||| ||| |||||||| |||||||| |||||||| |||||| Sbjct 49109 GACACAATCGAGAACGTCAAGTCAAAGATTCAAGATAAGGAGGGGATTCCACCAGATCAA 49168 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || || || || || || || || ||| | | ||| | |||||||||||| Sbjct 49169 CAACGTTTGATTTTCGCTGGTAAGCAATTGGAAGATGGCAGAACCCTTTCCGATTACAAC 49228 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATT 22436 || ||||| ||||| || | || | ||| || |||| Sbjct 49229 ATCCAAAAGGAATCAACTCTTCACCTTGTTCTGAGATT 49266 >seq42 Length=292872 Score = 147 bits (162), Expect = 2e-30 Identities = 162/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || |||||||| || ||||| || || | |||||||| || || ||| Sbjct 165712 ATGCAAATCTTCGTTAAAACCTTGACCGGAAAGACCATTACTCTTGAGGTTGAGTCCAAT 165771 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || | | ||| ||| || ||||||||||| || |||||||| || ||| Sbjct 165772 GATACCATTGAAAACGTTAAATCAAAGATCCAAGACAAGGAAGGAATTCCACCAGACCAA 165831 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | || || |||||||| || || ||||| || | ||| | || ||||||||| Sbjct 165832 CAAAGACTCATCTTTGCCGGAAAGCAATTAGAAGACGGAAGAACCTTGTCTGATTACAAC 165891 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGA 22434 |||||||||||||| || | || || |||||| || Sbjct 165892 ATTCAAAAAGAATCAACATTGCACTTGGTTTTGAGA 165927 Score = 143 bits (158), Expect = 2e-29 Identities = 169/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| |||||||||||||| || || || || | || | ||||| ||| ||| Sbjct 166168 ATGCAAATCTTTGTTAAAACTTTGACTGGCAAGACCATTACATTGGAAGTCGAATCCAAT 166227 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || || |||| ||| || ||||| ||||| || ||||| || || ||| Sbjct 166228 GATACCATCGAGAATGTCAAGTCAAAGATCCAAGATAAGGAAGGCATTCCTCCAGACCAA 166287 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | | || || || || || || || || ||| | ||| |||||||||||||| Sbjct 166288 CAAAGATTGATTTTCGCTGGTAAGCAATTGGAAGATGGAAGAACCCTCTCCGATTACAAC 166347 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGTT 22447 ||||||||||| || || | || | |||||| ||||| | ||||||| Sbjct 166348 ATTCAAAAAGAGTCTACTCTTCACCTTGTTTTGAGATTGAGGGGAGGTT 166396 Score = 141 bits (156), Expect = 8e-29 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 ||||||||||| || || || || | || ||||| || ||||||| ||||| ||| || Sbjct 165481 AAGATGCAAATCTTCGTCAAGACCCTCACTGGTAAGACTATCACTCTCGAAGTCGAATCC 165540 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | ||| || | || | | ||| || || ||||||||||| || |||||||| ||| Sbjct 165541 AACGACACGATTGAGAACGTGAAAAGCAAGATCCAAGACAAGGAAGGAATTCCACCTGAT 165600 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 ||||||||| | || ||||| || ||||| || || || | ||| | ||||| ||| Sbjct 165601 CAACAACGTTTGATTTTTGCTGGTAAACAATTGGAAGACGGAAGAACCTTGTCCGACTAC 165660 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| ||||| |||||||| | || || || ||| ||||| | || ||| Sbjct 165661 AACATCCAAAAGGAATCCACTCTCCACTTGGTCTTGAGATTGAGAGGTGGT 165711 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || | || ||||| || | ||| | ||||| ||| ||| | Sbjct 165940 ATGCAAATCTTCGTCAAGACCCTCACTGGTAAGACAATTACTTTGGAAGTTGAATCCAAC 165999 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | | || || |||||||| ||||| ||||||||||| |||||| Sbjct 166000 GACACCATCGAAAACGTGAAGAGCAAGATTCAAGATAAGGAAGGTATTCCACCAGATCAA 166059 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || ||||| || ||||| || || || | || ||||||| |||||| Sbjct 166060 CAACGTTTGATTTTTGCTGGTAAACAATTGGAAGACGGAAGAACTCTCTCCGACTACAAC 166119 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 |||||||| |||||||| | || | ||| | ||||| | ||||| Sbjct 166120 ATTCAAAAGGAATCCACATTGCACCTTGTTCTTAGATTGAGAGGAGG 166166 >seq120 Length=320511 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||| | ||||| ||||| ||||| || ||||| |||| | ||||| || ||| | Sbjct 60815 ATGCAATTGTTTGTGAAAACCTTAACTGGAAAAACTATCACATTGGAAGTAGAGTCCAAC 60756 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || | | || || | || |||||| || || ||||| |||||| |||||||| Sbjct 60755 GACTCGATTGAGAATGTGAAGAGCAAAATTGCTGATAAAGAGGGAATTCCAGCCGATCAA 60696 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || | || |||||||| || |||||| | || |||| ||||||||| Sbjct 60695 CAACGTTTAATTTACGCTGGCAAACAATTGGAGGATGGAAGAACAATCTCTGATTACAAC 60636 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 | |||||||| || ||||| || | || ||| || | || ||||| Sbjct 60635 TTGCAAAAAGATTCGACCATTCACCTTGTGTTGAGACTTCGTGGAGG 60589 >seq26 Length=133099 Score = 113 bits (124), Expect = 4e-20 Identities = 166/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || |||||||| ||||| ||||| || || ||||| || | || | ||||| || || Sbjct 73059 AACATGCAAATCTTTGTGAAAACCTTGACTGGTAAGACCATTACCTTGGAAGTAGAGTCC 73118 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || | | || | |||| ||||| || ||||| || |||||| ||||| Sbjct 73119 AATGACTCGATCGAGAACGTCAAGAGCAAAATAGCCGATAAGGAAGGGATTCCAGCCGAT 73178 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 |||||||| | || || || || ||||| ||||||||| | ||| | || |||||| Sbjct 73179 CAACAACGATTGATTTTCGCAGGAAAACAATTAGAGGATGGAAGAACCTTGTCTGATTAC 73238 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGTTTTC 22450 | | |||| || || || ||| | ||||| || ||| ||||| | ||||||| || Sbjct 73239 AGCGTTCAGAAGGATTCTACCTTGCATTTGGTGTTGAGATTGAGGGGAGGTTCTC 73293 >seq76 Length=223365 Score = 104 bits (114), Expect = 2e-17 Identities = 110/145 (76%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 22302 AAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAA 22361 ||| || ||||||||||| |||||||| || ||||||||| | | || ||||| || || Sbjct 84431 AAAGATCCAAGACAAGGAAGGTATTCCTCCAGATCAACAAAGATTGATTTTTGCTGGTAA 84372 Query 22362 ACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACA 22421 || || |||||| | | || | || || |||||||||||||| |||||||| | || Sbjct 84371 GCAATTGGAGGATGGCAGAACATTGTCTGACTACAACATTCAAAAGGAATCCACTCTCCA 84312 Query 22422 TTTAGTTTTGCGATTGCGCGGAGGT 22446 || || ||| ||||| | || ||| Sbjct 84311 CTTGGTCTTGAGATTGAGAGGTGGT 84287 >seq66 Length=52705 Score = 98.7 bits (108), Expect = 8e-16 Identities = 108/143 (76%), Gaps = 2/143 (1%) Strand=Plus/Plus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || ||| |||||| |||||||||||| | |||||||||||| | || | ||| || ||| Sbjct 176 AAGATTGCAGACAAAGAGGGTATTCCAGCAGATCAACAACGTTTAATCTATGCTGGAAAA 235 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 || ||||||||| | | || || ||||||| ||| | ||| | || ||||| || Sbjct 236 CAATTAGAGGATGGAAGAAGTGTTTCTGATTACA--ATTAACAAAAACTCGACCATTCAC 293 Query 22423 TTAGTTTTGCGATTGCGCGGAGG 22445 | |||||| ||||||| ||||| Sbjct 294 CTTGTTTTGAGATTGCGTGGAGG 316 >seq38 Length=237352 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || |||||| | || |||||||| | || |||| ||| |||| | || || || || Sbjct 109522 AAAATGCAATTATTCGTTAAAACACTTACAGGTAGAACAATCACATTGGATGTTGAGTCC 109463 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || | | || || | ||||| ||||| ||| ||||| || |||||| | ||| Sbjct 109462 AATGACTCGATTGAGAATGTTAAACAGAAAATCACAGATAAGGAAGGCATTCCAGCTGAT 109403 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 ||||||||| | || | ||| || ||||| ||||||||| | || | || |||||| Sbjct 109402 CAACAACGTTTGATTTATGCTGGAAAACAATTAGAGGATGGAAGAACTTTATCGGATTAC 109343 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || | ||||| || | || | || || || ||| |||| || || ||| Sbjct 109342 AATGTACAAAAGGATGCTACTCTTCACTTGGTGTTGAGATTACGTGGTGGT 109292 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||| | ||||| | ||||||||| || ||||| ||||| | || | || | | Sbjct 109291 ATGCAACTCTTTGTGAGAACTTTAACTGGAAAAACAATCACTTTGGAGGCAGAGATGAAT 109232 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | | || || ||| || ||||| |||||||| | |||||| Sbjct 109231 GACACTATTGAGAGTGTAAAGAGTAAGATTTTTGAAAAGGATGGTATTCCTTCGGATCAA 109172 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | |||| ||||| || || || || |||||| | || | ||| |||||| Sbjct 109171 CAAAGAATTATCTTTGCTGGTAAGCAATTGGAGGATGGAAGAACTTTGAGCGACTACAAC 109112 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGA 22434 |||||||| || ||||| |||| || |||||| || Sbjct 109111 ATTCAAAAGGATTCCACTCTACACTTGGTTTTGAGA 109076 >seq151 Length=76492 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||| | || || || ||||| || || || || |||| |||||| || ||| Sbjct 51037 ATGCAATTATTCGTCAAGACTTTGACAGGAAAGACCATCACGATTGAAGCAGAGTCCAAT 51096 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || | | || | | || ||| ||| || ||||| ||||||||| | |||||| Sbjct 51097 GACTCGATTGAGAACGTGAAGAGAAAGATTTGTGATAAGGAAGGTATTCCAGCGGATCAA 51156 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || | || || ||||| || |||||| | || || || || || | | Sbjct 51157 CAACGTTTAATTTACGCTGGAAAACAATTGGAGGATGGAAGAACAGTTTCTGACTATAGC 51216 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 | |||||||| || || || ||| | |||||| || |||| ||||| Sbjct 51217 TTGCAAAAAGATTCAACTATCCATCTTGTTTTGAGACTGCGAGGAGG 51263 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419725063740310