Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq215 100 6e-16 seq172 100 6e-16 seq156 100 6e-16 seq107 100 6e-16 seq91 100 6e-16 seq89 100 6e-16 seq38 100 6e-16 seq35 100 6e-16 seq81 95.1 2e-14 >seq215 Length=80212 Score = 100 bits (110), Expect = 6e-16 Identities = 61/65 (94%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| |||||||||||||||||||| ||||||||||||| |||||||||||||||||| Sbjct 49929 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAGC 49870 Query 142564 CCCAC 142568 ||||| Sbjct 49869 CCCAC 49865 >seq172 Length=81926 Score = 100 bits (110), Expect = 6e-16 Identities = 61/65 (94%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| |||||||||||||||||||| ||||||||||||| |||||||||||||||||| Sbjct 47080 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAGC 47139 Query 142564 CCCAC 142568 ||||| Sbjct 47140 CCCAC 47144 >seq156 Length=97175 Score = 100 bits (110), Expect = 6e-16 Identities = 61/65 (94%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| |||||||||||||||||||| ||||||||||||| |||||||||||||||||| Sbjct 45631 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAGC 45572 Query 142564 CCCAC 142568 ||||| Sbjct 45571 CCCAC 45567 >seq107 Length=79523 Score = 100 bits (110), Expect = 6e-16 Identities = 316/490 (64%), Gaps = 0/490 (0%) Strand=Plus/Plus Query 218513 TCCCTGACTTCATCGACAAGGAGCTCATTCTTTTCTCGCGGTATGATGTGGAGCGTTCTA 218572 || |||| ||||| || ||||| |||||| | || ||| | | ||| | | || | Sbjct 60671 TCTCTGATTTCATTGATAAGGAACTCATTTTGTTTTCGAAGGAGGATTGTAAAAGATCCA 60730 Query 218573 TTCCCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCA 218632 |||| || | || ||||| | ||||| || | || || || || |||| Sbjct 60731 TTCCAAGTCTTGTCGATGGTTTAAAGCCTGGTCAAAGAAAAATTCTGTTCAGTTGTTTCA 60790 Query 218633 AGCGGAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTT 218692 || | || ||| | ||||||||||| ||||| || | |||||||| |||||| | Sbjct 60791 AGAGAAATCTGAAAAACGAAATTAAGGTTGCTCAACTTGCAGGTTATGTCTCCGAACAAT 60850 Query 218693 CTGGCTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACT 218752 || |||||||| || ||||| ||| | |||||| ||| | |||||| || ||| Sbjct 60851 CTTCATACCATCATGGAGAGCAAAGTTTAACGGGTGCAATTATTAACATGGCCCAAAACT 60910 Query 218753 ATGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCTAT 218812 ||| || ||||||||||| || || || || | ||| ||||||| | | | Sbjct 60911 TTGTTGGAAGTAACAACATCAATCTGTTGTATCCAAGTGGTATGTTTGGTACCAGGTTGC 60970 Query 218813 TGGGTGGAAAGGATAGTGCTTCTGCCAGGTATATCTTTACAAAGTTGTCGCCCGTGACGC 218872 || ||||| ||| || | || ||||| || |||| | | || | || Sbjct 60971 AAGGAGGAAAAGATGCCGCAAGCTCAAGATATATTTTCACAAGGCTTTCAGAGATCACAA 61030 Query 218873 GCCAGGTGTTCAATCAGGCCGATGATGTGCTCCTTAAGTATCTTGAGGACGATGGTTCTT 218932 | | | ||| |||| |||||| |||| | ||| | || || |||||| | Sbjct 61031 GATACATTTTCCCAAAGGCTGATGATCCAATCCTGGATTATTTGGATGATGATGGTCAGT 61090 Query 218933 CGATTGAGCCCGAGTGGTATGTGCCTGCTATTCCGTTTTTGCTCGTAAATGGTGCCAATG 218992 | ||||| || | | |||||||| |||||| | | || || |||||||| ||| Sbjct 61091 CTATTGAACCTAAATTCTATGTGCCAATTATTCCCATGGTACTTGTCAATGGTGCGGATG 61150 Query 218993 GTATCGGGAC 219002 |||| || || Sbjct 61151 GTATTGGTAC 61160 >seq91 Length=202828 Score = 100 bits (110), Expect = 6e-16 Identities = 61/65 (94%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| |||||||||||||||||||| ||||||||||||| |||||||||||||||||| Sbjct 22384 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAGC 22325 Query 142564 CCCAC 142568 ||||| Sbjct 22324 CCCAC 22320 >seq89 Length=27182 Score = 100 bits (110), Expect = 6e-16 Identities = 61/65 (94%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| |||||||||||||||||||| ||||||||||||| |||||||||||||||||| Sbjct 8564 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAGC 8505 Query 142564 CCCAC 142568 ||||| Sbjct 8504 CCCAC 8500 >seq38 Length=237352 Score = 100 bits (110), Expect = 6e-16 Identities = 61/65 (94%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| |||||||||||||||||||| ||||||||||||| |||||||||||||||||| Sbjct 67430 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAGC 67489 Query 142564 CCCAC 142568 ||||| Sbjct 67490 CCCAC 67494 >seq35 Length=58095 Score = 100 bits (110), Expect = 6e-16 Identities = 61/65 (94%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| |||||||||||||||||||| ||||||||||||| |||||||||||||||||| Sbjct 58067 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAGC 58008 Query 142564 CCCAC 142568 ||||| Sbjct 58007 CCCAC 58003 >seq81 Length=73801 Score = 95.1 bits (104), Expect = 2e-14 Identities = 60/65 (92%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| ||||||||||||||||| || ||||||||||||| |||||||||||||||||| Sbjct 59258 GCCCGTCTAGCTCAGTCGGTAGAGAGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAGC 59317 Query 142564 CCCAC 142568 ||||| Sbjct 59318 CCCAC 59322 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027829240902734