Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= NC_008617.1 Length=44061 Score E Sequences producing significant alignments: (Bits) Value seq565 390 3e-104 seq554 80.6 8e-11 >seq565 Length=3067 Score = 390 bits (432), Expect = 3e-104 Identities = 234/245 (96%), Gaps = 2/245 (1%) Strand=Plus/Plus Query 41227 AGGTAATAGAATAAGCAGTTTTGGTAAGTTTAGTGCAGTTTGATAATTAGATATATAAAG 41286 ||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||| Sbjct 2825 AGGTAATAGAATAAGCAGTTTTGGTAATTTTAGCGCAGTTTGATAATTA--TATATAAAG 2882 Query 41287 GTTTGGCAAGTTATGAAATGTCTGCCAAACCTTTATATAAAAAAGAAATATCTACCTTTT 41346 |||||||||||||||||||||||||||||||||||||||||||| ||| | | ||||||| Sbjct 2883 GTTTGGCAAGTTATGAAATGTCTGCCAAACCTTTATATAAAAAAAAAAAAGCCACCTTTT 2942 Query 41347 AATTTATGTAACTACTATTAGTATGCATATTCATTAGTTTTTCCAGGACCATTAATTACA 41406 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 2943 GCTTTATGTAACTACTATTAGTATGCATATTCATTAGTTTTACCAGGACCATTAATTACA 3002 Query 41407 TAAGATGATTTAGACTCTCCTTTTTTAAAGAAGTATGTTTTATACATTTTACCTAGTAAC 41466 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3003 TAAGATGATTTAGACTCTCCTTTTTTAAAGAAGTATGTTTTATACATTTTACCTAGTAAC 3062 Query 41467 TCAAC 41471 ||||| Sbjct 3063 TCAAC 3067 >seq554 Length=1012 Score = 80.6 bits (88), Expect = 8e-11 Identities = 64/76 (84%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 42047 TGCTATATTTATCTTAGACACAGCAATGTGTTCAAATTTTCATCTATTCATAAGCTAGCC 42106 ||||||| | | ||||||||||||||||||||||| ||| ||||||| || | ||||| Sbjct 362 TGCTATAATCGTTTTAGACACAGCAATGTGTTCAAAATTTAATCTATTTGTACGTTAGCC 421 Query 42107 TTCGGGCT-AGTTTTT 42121 |||||||| | ||||| Sbjct 422 TTCGGGCTGACTTTTT 437 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 140872639770324