Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= NC_008689.1 Length=44857 Score E Sequences producing significant alignments: (Bits) Value seq516 203 9e-48 seq513 132 1e-26 seq565 84.2 6e-12 >seq516 Length=4294 Score = 203 bits (224), Expect = 9e-48 Identities = 133/144 (92%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 41766 AGGTTTTGTATTAATGGCACTTAATATAAGGAAAATAGTAGCTCGACGAGCTGTATATTA 41825 |||||||||||||||||||||||||||||||||||||| ||||| |||||| |||||| | Sbjct 2985 AGGTTTTGTATTAATGGCACTTAATATAAGGAAAATAGCAGCTCAACGAGCAGTATAT-A 3043 Query 41826 TCAAATACATTT-aaaaaaaGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTT 41884 |||||||||||| ||||||||||||||||||||||||||| ||||| |||||||||||| Sbjct 3044 TCAAATACATTTCAAAAAAAGCTGATTTCTATCAAATAATGAATAGTAATCAGCTTTTTC 3103 Query 41885 ACATTGCCTAAGAACTTAATGTCC 41908 |||||||||||| |||| ||| || Sbjct 3104 ACATTGCCTAAGGACTTTATGCCC 3127 Score = 199 bits (220), Expect = 1e-46 Identities = 132/144 (92%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 41766 AGGTTTTGTATTAATGGCACTTAATATAAGGAAAATAGTAGCTCGACGAGCTGTATATTA 41825 |||||||||||||||||||||||||||||||||||||| |||| |||||| |||||| | Sbjct 1364 AGGTTTTGTATTAATGGCACTTAATATAAGGAAAATAGCAGCTTAACGAGCAGTATAT-A 1422 Query 41826 TCAAATACATTT-aaaaaaaGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTT 41884 |||||||||||| ||||||||||||||||||||||||||| ||||| |||||||||||| Sbjct 1423 TCAAATACATTTCAAAAAAAGCTGATTTCTATCAAATAATGAATAGTAATCAGCTTTTTC 1482 Query 41885 ACATTGCCTAAGAACTTAATGTCC 41908 |||||||||||| |||| ||| || Sbjct 1483 ACATTGCCTAAGGACTTTATGCCC 1506 >seq513 Length=1269 Score = 132 bits (146), Expect = 1e-26 Identities = 109/130 (84%), Gaps = 2/130 (2%) Strand=Plus/Plus Query 41833 CATTTaaaaaaaGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCC 41892 ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 CATATCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCC 60 Query 41893 TAAGAACTTAATGTCCCAAGCTCATTATTTAAAATTAATAAACAGTTAATTTTTACATGA 41952 ||||||||||||||||| ||| ||| || ||||| | || || | ||| | | || Sbjct 61 TAAGAACTTAATGTCCC-AGCCTATTCGTTTGAATTATTTAATTTTTTACTTTGAAAGGA 119 Query 41953 ATATATTAAA 41962 || | ||||| Sbjct 120 ATGT-TTAAA 128 >seq565 Length=3067 Score = 84.2 bits (92), Expect = 6e-12 Identities = 51/54 (94%), Gaps = 0/54 (0%) Strand=Plus/Plus Query 39906 AGGTAATAGAATAAGCAGTTTTGGTAAGTTTAGTGCAGTTTGATAATTGTATAT 39959 ||||||||||||||||||||||||||| ||||| |||||||||||||| ||||| Sbjct 2825 AGGTAATAGAATAAGCAGTTTTGGTAATTTTAGCGCAGTTTGATAATTATATAT 2878 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143419822407972