Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq42 102 6e-17 >seq42 Length=292872 Score = 102 bits (112), Expect = 6e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||| ||| ||||||| || || ||||| |||||||| ||||| ||| || Sbjct 166167 AATGCAAATCTTTGTTAAAACTTTGACTGGCAAGACCATTACATTGGAAGTCGAATCCAA 166226 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || || | | || | ||| ||| || ||||| || || | ||| | |||| Sbjct 166227 TGATACCATCGAGAATGTCAAGTCAAAGATCCAAGATAAGGAAGGCATTCCTCCAGACCA 166286 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||| ||| | || || ||||| || ||| | |||||| || ||| | |||||||||| Sbjct 166287 ACAAAGATTGATTTTCGCTGGTAAGCAATTGGAAGATGGAAGAACCCTCTCCGATTACAA 166346 Query 22013 TATTCAGAAGGAATCTACTCTTCA 22036 ||||| || || ||||||||||| Sbjct 166347 CATTCAAAAAGAGTCTACTCTTCA 166370 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358122294693196