Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq42 123 2e-23 seq82 111 1e-19 seq29 102 7e-17 seq38 91.5 1e-13 >seq42 Length=292872 Score = 123 bits (136), Expect = 2e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 114167 TCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGA 114226 ||||||||| | || | ||||| ||||||||||||||||||||| | || | Sbjct 166383 TCTCAAAACAAGGTGAAGAGTAGACTCTTTTTGAATGTTGTAATCGGAGAGGGTTCTTCC 166324 Query 114227 ATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTT 114286 |||||| | ||| ||||||||| | || | | |||||||| |||||||||||||| || Sbjct 166323 ATCTTCCAATTGCTTACCAGCGAAAATCAATCTTTGTTGGTCTGGAGGAATGCCTTCCTT 166264 Query 114287 GTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCAC 114346 || |||||| || | | || | ||| || |||||||||| |||| || | Sbjct 166263 ATCTTGGATCTTTGACTTGACATTCTCGATGGTATCATTGGATTCGACTTCCAATGTAAT 166204 Query 114347 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || ||||| |||| |||||| ||||| || ||||| Sbjct 166203 GGTCTTGCCAGTCAAAGTTTTAACAAAGATTTGCAT 166168 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || | ||||||||||| || || | || ||||||||||||||||||||||| Sbjct 165941 ATACCACCTCTGAGTCTCAAAACCAAGTGCAATGTTGATTCTTTTTGAATGTTGTAATCA 165882 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || | ||||| | ||| || || || ||||||| | |||||||| || Sbjct 165881 GACAAGGTTCTTCCGTCTTCTAATTGCTTTCCGGCAAAGATGAGTCTTTGTTGGTCTGGT 165822 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||| ||||| |||||| ||| | | ||||| ||| || |||| || Sbjct 165821 GGAATTCCTTCCTTGTCTTGGATCTTTGATTTAACGTTTTCAATGGTATCATTGGACTCA 165762 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | || || ||||||| ||||| || || || ||||| Sbjct 165761 ACCTCAAGAGTAATGGTCTTTCCGGTCAAGGTTTTAACGAAGATTTGCAT 165712 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || | | |||||| || || || | || ||||| ||||| |||||||| ||| Sbjct 165713 ATACCACCTCTCAATCTCAAGACCAAGTGGAGAGTGGATTCCTTTTGGATGTTGTAGTCG 165654 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || | ||||| | |||||||||||| | || | ||| ||||| || || Sbjct 165653 GACAAGGTTCTTCCGTCTTCCAATTGTTTACCAGCAAAAATCAAACGTTGTTGATCAGGT 165594 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||| ||||| ||||| ||| | | |||| |||||| |||||||| Sbjct 165593 GGAATTCCTTCCTTGTCTTGGATCTTGCTTTTCACGTTCTCAATCGTGTCGTTGGATTCG 165534 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | || || || || || || || || || || ||||| Sbjct 165533 ACTTCGAGAGTGATAGTCTTACCAGTGAGGGTCTTGACGAAGATTTGCAT 165484 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||| |||||||||||||| ||| | ||| | ||||| | |||||||||| Sbjct 166136 GTGGATTCCTTTTGAATGTTGTAGTCGGAGAGAGTTCTTCCGTCTTCCAATTGTTTACCA 166077 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || | || | ||| ||||| || || ||||| ||||| || || |||||| || Sbjct 166076 GCAAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCCTTATCTTGAATCTTGCTCTTC 166017 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | ||| | ||||||| ||||||| || |||| || | || || || || || || Sbjct 166016 ACGTTTTCGATGGTGTCGTTGGATTCAACTTCCAAAGTAATTGTCTTACCAGTGAGGGTC 165957 Query 114366 TTTACAAAAATCTGCAT 114382 || || || || ||||| Sbjct 165956 TTGACGAAGATTTGCAT 165940 >seq82 Length=211372 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 114167 TCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGA 114226 |||||| || || || | |||||||| |||||||||||||| || || || | Sbjct 147717 TCTCAAGACCAAGTGCAATGTAGATTCCTTTTGAATGTTGTAGTCAGACAAGGTTCTGCC 147776 Query 114227 ATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTT 114286 |||||| | ||| || || || |||| | | ||||| || |||||||| ||||| || Sbjct 147777 ATCTTCCAATTGCTTTCCGGCAAAGATCAATCTTTGTTGATCTGGAGGAATACCTTCCTT 147836 Query 114287 GTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCAC 114346 ||| ||||||| || | | || | ||||||| |||||||||| |||| || | Sbjct 147837 GTCTTGAATCTTTGACTTGACATTCTCGATGGTGTCGTTGGATTCGACCTCCAAAGTGAT 147896 Query 114347 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || ||||||| || || || ||||| ||||| Sbjct 147897 GGTCTTACCGGTCAAGGTCTTAACGAAAATTTGCAT 147932 >seq29 Length=427163 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 114154 TACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGC 114213 |||| || | || ||||| ||| | || | || ||||| ||||| |||||||||||| Sbjct 49277 TACCACCTCTTAATCTCAGAACAAGGTGAAGAGTTGATTCCTTTTGGATGTTGTAATCGG 49218 Query 114214 TCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAG 114273 | || | |||||| | ||| ||||||||| | || | ||| ||||| || || | Sbjct 49217 AAAGGGTTCTGCCATCTTCCAATTGCTTACCAGCGAAAATCAAACGTTGTTGATCTGGTG 49158 Query 114274 GAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGA 114333 |||| || || || || ||||||| || | | || | |||||| | ||||| | Sbjct 49157 GAATCCCCTCCTTATCTTGAATCTTTGACTTGACGTTCTCGATTGTGTCGTTAGATTCAA 49098 Query 114334 CGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | |||| || | || || || |||| |||||| || ||||| ||||| Sbjct 49097 CTTCCAAAGTGATGGTCTTTCCTGTCAAAGTTTTCACGAAAATTTGCAT 49049 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || | ||||| | || | || | || ||||| |||||||||||||| ||| Sbjct 48784 ATACCACCTCTGAGTCTGAGGACAAGGTGGAGAGTGGATTCCTTTTGAATGTTGTAGTCG 48725 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || | |||||| | ||| || || || ||||||| | ||||| || || Sbjct 48724 GACAAGGTTCTTCCATCTTCTAATTGCTTTCCGGCAAAGATGAGTCTTTGTTGATCAGGT 48665 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||| ||||| ||||| ||| | | || | |||||| |||||||| Sbjct 48664 GGAATTCCTTCCTTGTCTTGGATCTTGCTTTTCACGTTCTCGATTGTGTCGTTGGATTCG 48605 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || || | || | || ||||| || | ||| || || || || |||||| Sbjct 48604 ACTTCAAGAGTGATAGTCTTGCCAGTTAAAGTCTTGACGAAGATTTGCATG 48554 >seq38 Length=237352 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||||| |||||| || || || | |||| || ||||| | |||||||| Sbjct 109290 ATACCACCACGTAATCTCAACACCAAGTGAAGAGTAGCATCCTTTTGTACATTGTAATCC 109349 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||| | ||| || | |||||| ||||| || || | ||| ||||| || | Sbjct 109350 GATAAAGTTCTTCCATCCTCTAATTGTTTTCCAGCATAAATCAAACGTTGTTGATCAGCT 109409 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||||||||| || || | || || ||||| | | |||| | ||| |||| || Sbjct 109410 GGAATGCCTTCCTTATCTGTGATTTTCTGTTTAACATTCTCAATCGAGTCATTGGACTCA 109469 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | ||| | || || || ||||| || || | ||||| Sbjct 109470 ACATCCAATGTGATTGTTCTACCTGTAAGTGTTTTAACGAATAATTGCAT 109519 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 114165 AGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGA 114224 ||||||||||| || |||| || || || |||||||||||||| ||||||| ||| | Sbjct 109074 AGTCTCAAAACCAAGTGTAGAGTGGAATCCTTTTGAATGTTGTAGTCGCTCAAAGTTCTT 109133 Query 114225 GAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCT 114284 ||| || | ||| |||||||| |||| | | ||||| |||| |||||| || || Sbjct 109134 CCATCCTCCAATTGCTTACCAGCAAAGATAATTCTTTGTTGATCCGAAGGAATACCATCC 109193 Query 114285 TTGTCGGCAATCTT 114298 || || |||||| Sbjct 109194 TTTTCAAAAATCTT 109207 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420131460897288