Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq42 149 1e-30 seq29 149 1e-30 seq151 118 3e-21 seq93 105 2e-17 seq38 93.3 1e-13 seq26 93.3 1e-13 >seq42 Length=292872 Score = 149 bits (164), Expect = 1e-30 Identities = 148/192 (77%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| |||||||| || ||||||| | || | ||||||||| |||||||| || || || Sbjct 165675 TTCCTTTTGGATGTTGTAGTCGGACAAGGTTCTTCCGTCTTCCAATTGTTTACCAGCAAA 165616 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 |||| ||| |||||| | ||| |||||||| || || ||||| || ||||||||| Sbjct 165615 AATCAAACGTTGTTGATCAGGTGGAATTCCTTCCTTGTCTTGGATCTTGCTTTTCACGTT 165556 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || || | ||| | ||||| |||||||| ||||| ||||| || || || |||||||| Sbjct 165555 CTCAATCGTGTCGTTGGATTCGACTTCGAGAGTGATAGTCTTACCAGTGAGGGTCTTGAC 165496 Query 288462 GAATATCTGCAT 288473 ||| || ||||| Sbjct 165495 GAAGATTTGCAT 165484 Score = 141 bits (156), Expect = 2e-28 Identities = 163/217 (75%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 288258 TCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCC 288317 |||||| || || || | ||| ||| ||||| || || ||||||| ||| || | ||| Sbjct 166155 TCTAAGAACAAGGTGCAATGTGGATTCCTTTTGAATGTTGTAGTCGGAGAGAGTTCTTCC 166096 Query 288318 GTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTT 288377 |||||| |||||||| || || || |||| ||| |||||| ||| || ||||| || Sbjct 166095 GTCTTCCAATTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGTGGAATACCTTCCTT 166036 Query 288378 ATCCTGGATTTTCGCT-TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGA 288436 ||| || || || ||| ||||||||||| || | ||| | ||||| ||||| | || | Sbjct 166035 ATCTTGAATCTT-GCTCTTCACGTTTTCGATGGTGTCGTTGGATTCAACTTCCAAAGTAA 165977 Query 288437 TCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | ||||| || || || ||||||||||| || ||||| Sbjct 165976 TTGTCTTACCAGTGAGGGTCTTGACGAAGATTTGCAT 165940 Score = 113 bits (124), Expect = 1e-19 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||||||||| || || || || | | || | ||||||||||||||| ||||| || || Sbjct 165903 TTCTTTTTGAATGTTGTAATCAGACAAGGTTCTTCCGTCTTCTAATTGCTTTCCGGCAAA 165844 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 ||| || | ||||| ||| |||||||| || || ||||| || | ||| ||||| Sbjct 165843 GATGAGTCTTTGTTGGTCTGGTGGAATTCCTTCCTTGTCTTGGATCTTTGATTTAACGTT 165784 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 ||| || | ||| | || || || || || || || ||||| ||||||| || || || Sbjct 165783 TTCAATGGTATCATTGGACTCAACCTCAAGAGTAATGGTCTTTCCGGTCAAGGTTTTAAC 165724 Query 288462 GAATATCTGCAT 288473 ||| || ||||| Sbjct 165723 GAAGATTTGCAT 165712 >seq29 Length=427163 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | |||||| || || || || | ||| ||| ||||| || || ||||||| Sbjct 48781 CCACCTCTGAGTCTGAGGACAAGGTGGAGAGTGGATTCCTTTTGAATGTTGTAGTCGGAC 48722 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || | ||| ||||||||||| ||||| || ||||| || | |||||| | ||| Sbjct 48721 AAGGTTCTTCCATCTTCTAATTGCTTTCCGGCAAAGATGAGTCTTTGTTGATCAGGTGGA 48662 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||| || || ||||| || ||||||||| || || | ||| | ||||| ||| Sbjct 48661 ATTCCTTCCTTGTCTTGGATCTTGCTTTTCACGTTCTCGATTGTGTCGTTGGATTCGACT 48602 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| ||||| || || | |||||||||||| || ||||| Sbjct 48601 TCAAGAGTGATAGTCTTGCCAGTTAAAGTCTTGACGAAGATTTGCAT 48555 >seq151 Length=76492 Score = 118 bits (130), Expect = 3e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||| || || ||||| | || ||||| || || |||||||| | ||||||| | Sbjct 51264 TCCTCCTCGCAGTCTCAAAACAAGATGGATAGTTGAATCTTTTTGCAAGCTATAGTCAGA 51205 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 | || | ||| || || ||||||||||| ||| | || | ||| |||||| |||| Sbjct 51204 AACTGTTCTTCCATCCTCCAATTGTTTTCCAGCGTAAATTAAACGTTGTTGATCCGCTGG 51145 Query 288366 GATTCCTTCTTTATCCTGGAT-TTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTA 288424 || ||||| ||||| || |||| ||| |||||| || || || || | || ||| Sbjct 51144 AATACCTTCCTTATCACAAATCTTTCTCTT-CACGTTCTCAATCGAGTCATTGGACTCTG 51086 Query 288425 CTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 |||| | |||||| ||||| || |||| |||||||||||||| ||||| Sbjct 51085 CTTCAATCGTGATGGTCTTTCCTGTCAAAGTCTTGACGAATAATTGCAT 51037 >seq93 Length=103736 Score = 105 bits (116), Expect = 2e-17 Identities = 292/435 (67%), Gaps = 22/435 (5%) Strand=Plus/Minus Query 268463 TTCCCATTC-AATATCATGATCTGTGGAACATGTACAAGAAGGCAGTGGCAACCTTTTGG 268521 |||||| || || |||| | | ||| | |||||||||||||| ||||| | || ||| Sbjct 85438 TTCCCAATCGAACATCAAAAGGTTTGGGAGATGTACAAGAAGGCCATGGCATCTTTCTGG 85379 Query 268522 ACCACCGAGGAAGTTCCTCTTAACGCAGACGTTGCAGACTGGCGTGAGAAACTGAACAAC 268581 || | || ||||| ||| || |||| |||| | ||| || | || || | | Sbjct 85378 ACTGCTGAAGAAGTGGATCTCCACACAGATATTGCTCAATGG---GAAACTCTCAATACC 85322 Query 268582 GATGAACGACACTTCATCAAACATATTCTGGGGTTCTTTGCAGGCTCCGACGGTATCGTG 268641 |||||| |||||||||||| | || ||| |||||||| | |||||| ||||| ||| Sbjct 85321 AATGAACAACACTTCATCAAGACTGTTTTGGCCTTCTTTGCTGCCTCCGATGGTATTGTG 85262 Query 268642 ATGGAAAATCTTCAGACAA-ACTTTGGTGTCGAAGTGATGGCACCAGAGGCACGACAATT 268700 | || || ||| | ||| | ||| | ||||| || || || || || Sbjct 85261 AATGAGAA-CTTGTGTCAACAATTTATGGCTGAAGTTCAAATTCCTGAAGCCAGATGTTT 85203 Query 268701 CTATGCATATCAAA----CATTCAACGAATCCGTTCATAGTGAAATGTATGCACTTCTTA 268756 ||||| || |||| |||| | |||| ||||| || |||||| || ||| | Sbjct 85202 CTATGGATTCCAAATTGCCATTGA--GAAT--ATTCATGCAGAGATGTATTCAACTCTAA 85147 Query 268757 TCGACGCGCTTATTTCAG---ACGAGCAAGAACGAC-TCGATCTCTTCGATGCCATCGAA 268812 | || | || || || ||||| |||| ||| ||| ||||||| ||||||| || Sbjct 85146 TTGAAAC-CTACATTAAGGACACGAG--AGAAAGACATCG-TCTCTTCAATGCCATTGAT 85091 Query 268813 ACTATTCCGGCGGTGCATAACAAGGCGAAATGGGCTCAGAAATGGTTGAAACCAGAAAGA 268872 ||| |||| | || || || ||||| |||||| ||||||| | || | || | Sbjct 85090 ACTGTTCCATCCGTTCAAAAGAAGGCTCGTTGGGCTTTGAAATGGATCAACTCGGATAAC 85031 Query 268873 TCGTTTGCAGAACGA 268887 | |||||| |||||| Sbjct 85030 TTGTTTGCTGAACGA 85016 >seq38 Length=237352 Score = 93.3 bits (102), Expect = 1e-13 Identities = 138/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || ||||| | ||| || || | | || | ||| || |||||||||||||| || | Sbjct 109329 TCCTTTTGTACATTGTAATCCGATAAAGTTCTTCCATCCTCTAATTGTTTTCCAGCATAA 109388 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||| ||| |||||| | |||| || ||||| ||||| ||||||| ||| || || Sbjct 109389 ATCAAACGTTGTTGATCAGCTGGAATGCCTTCCTTATCTGTGATTTTCTGTTTAACATTC 109448 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || || || | || || || || | ||||| || | || || || || || ||| Sbjct 109449 TCAATCGAGTCATTGGACTCAACATCCAATGTGATTGTTCTACCTGTAAGTGTTTTAACG 109508 Query 288463 AATATCTGCATTATGT 288478 |||| |||||| ||| Sbjct 109509 AATAATTGCATTTTGT 109524 >seq26 Length=133099 Score = 93.3 bits (102), Expect = 1e-13 Identities = 118/160 (74%), Gaps = 2/160 (1%) Strand=Plus/Minus Query 288315 TCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTC 288374 ||| || |||||||||||||||||||| |||| || |||||| |||| || ||||| Sbjct 73220 TCCATCCTCTAATTGTTTTCCTGCGAAAATCAATCGTTGTTGATCGGCTGGAATCCCTTC 73161 Query 288375 TTTATCCTGGATTTTCGCT-TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCG 288433 ||||| ||||| ||| || ||||| || || || || | || |||||||| | | Sbjct 73160 CTTATCGGCTATTTT-GCTCTTGACGTTCTCGATCGAGTCATTGGACTCTACTTCCAAGG 73102 Query 288434 TGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || ||||| || |||| || || || || || ||||| Sbjct 73101 TAATGGTCTTACCAGTCAAGGTTTTCACAAAGATTTGCAT 73062 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179645724379172