Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq36 197 2e-45 >seq36 Length=122865 Score = 197 bits (218), Expect = 2e-45 Identities = 620/958 (65%), Gaps = 7/958 (1%) Strand=Plus/Plus Query 114278 ATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGAC 114337 ||||| |||| || | || || ||||| | ||||| || ||||||||||||||| | Sbjct 115245 ATAAAGGCATCGGCCAATCCCTGAACACCCAAACCAATGGGACGATGTCTCATATTACTC 115304 Query 114338 TTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTG 114397 |||| ||| ||| || |||||| ||||| | || || | | | || | ||| |||||| Sbjct 115305 TTTCTAGCTTCCTCAACTGGATAATAATTCTTGTCAATGATCTTGTTCAAATTCTTGGTG 115364 Query 114398 ACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACA 114457 ||| || |||||| | | ||| | ||| | | || ||| ||||||||| Sbjct 115365 GCAATTTTGACAATTTCAAACAATTGTTCATGATCGTAGGTACGTGTCGTCTCATTGACA 115424 Query 114458 TACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTAC 114517 ||||| ||||| || || |||| |||||||||| ||||| | | ||||| Sbjct 115425 TACTTTGGAAGTGCAATACTTGCCAAGTTACACACAGCTACTTCATCTGGAGCTGTGTAT 115484 Query 114518 TCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGAC 114577 || |||||||| |||||||| || || || || || || | || | ||||||||| Sbjct 115485 TCAATAATTTCAGTACACAAGTTGGAGGATTTGATCGTTCCAAGATTTTGTTGATTTGAT 115544 Query 114578 TTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTG 114637 ||| | ||||| |||||||| ||||||||||| || || ||||| |||| | || Sbjct 115545 TTTCTATTACATGCATCCTTATAAAGCATGTAAGGAACACCAGTCTCAATTTGTGCCTCA 115604 Query 114638 AGAATAGCCTTCCAGACATCGGCGGCTGGCAC--AGTGGCGTTGGCTCGCCCCTCCTCCT 114695 | ||| || ||| | || || | || ||||| || || ||||||| || Sbjct 115605 ATAATTGCAAACCAAAGCTCTTGAGCACGAACGACACGGCGT--GCACGACCCTCCTTCT 115662 Query 114696 CGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCT 114755 | || || | | | ||||||||||||| | || | || || || || | Sbjct 115663 CATAACGCAAATACAATTCATTAAACTCTTCACCCCACACATCAGCAAGTCCAGGAGCTT 115722 Query 114756 TATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTG 114815 || || || ||||| ||||| ||| | |||||| || | || ||| || | || Sbjct 115723 CATTAGGACAAAAGAGTGACCAATGAGAATCCTCCTTCACTCTCTCCATAAACAAATCAT 115782 Query 114816 GGATCCAGAGAGCTGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGAC 114875 | ||| | | | | || | ||| ||| ||| ||| || | || ||| | Sbjct 115783 TCACCCACAAACCCAAAAACAAATCTCGAGCTCGAATTTCCTCCTTTCCAGTATTCTTTC 115842 Query 114876 GCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACC 114935 ||| || ||||| || | ||||| | ||||| || |||| || || || | | | Sbjct 115843 TCAAATCTAAAAAATCAAAAATATCGGAATGCCAAGGCTCCAAATAAACGGCAAAGGCTC 115902 Query 114936 CCTTACG---ACGACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCA 114992 | || || || |||| | || | || || | || ||| | || ||||| ||||||| Sbjct 115903 CTTTTCGTTTACCACCACCTTGATCCACGTAACGGGCAGTGTCGTTGAATACACGAAGCA 115962 Query 114993 TTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGA 115052 | ||||||| |||| || || || || || ||||| || | ||| | | Sbjct 115963 TGGGAATGAGTCCATTGGAGGTTCCGTTGGTTCCTCGAATGTAGGATCCAGAGGCACGAA 116022 Query 115053 CATCATGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGA 115112 | ||| | | || || ||||| || || | ||| || || || ||| | ||| Sbjct 116023 TGTTATGAACGGACAAGCCGATACCACCAGCACTCTTGGATATCAAGGCACACGTCTTGA 116082 Query 115113 GACTGCCGTAGATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACA 115172 | | |||| || || || || || | || | || | | |||||| || Sbjct 116083 GTGTATCGTAAATACCTGAAATGGAATCGTCTTTCATGGCCACTAAGAAGCAAGAACTCA 116142 Query 115173 TTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACC 115230 |||| || | || |||||||| |||||||| || || | ||||||||||||||||| Sbjct 116143 TTTGAGGAGTGGGAGTACCAGCATTGAAGAGAGTAGGAGAGGCGTGGATGAACATACC 116200 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597349313987920