Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq82 93.3 5e-14 seq42 93.3 5e-14 seq26 87.8 2e-12 seq151 84.2 2e-11 seq29 84.2 2e-11 >seq82 Length=211372 Score = 93.3 bits (102), Expect = 5e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||||||||| || | ||| ||||| |||||||| ||||||||||| ||||| |||| Sbjct 147705 ACCTCCTCTCAATCTCAAGACCAAGTGCAATGTAGATTCCTTTTGAATGTTGTAGTCAGA 147764 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || || | | || || | ||||| || || || || | || || || || | || Sbjct 147765 CAAGGTTCTGCCATCTTCCAATTGCTTTCCGGCAAAGATCAATCTTTGTTGATCTGGAGG 147824 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 42159 | | ||||||| | ||| | |||| |||| || | | |||||| | ||||| | Sbjct 147825 AATACCTTCCTTGT-CTTGAATCTTTGACTTGACATTCTCGATGGTGTCGTTGGATTCGA 147883 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 | || | |||||||| || || || | ||||| || || ||||||||| Sbjct 147884 CCTCCAAAGTGATGGTCTTACCGGTCAAGGTCTTAACGAAAATTTGCATT 147933 >seq42 Length=292872 Score = 93.3 bits (102), Expect = 5e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| ||||| || | ||| ||||| || | ||| |||||||| || ||||| || | Sbjct 165711 ACCACCTCTCAATCTCAAGACCAAGTGGAGAGTGGATTCCTTTTGGATGTTGTAGTCGGA 165652 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || || | |||| || | || |||||||| || || | || || || || | ||| Sbjct 165651 CAAGGTTCTTCCGTCTTCCAATTGTTTACCAGCAAAAATCAAACGTTGTTGATCAGGTGG 165592 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | | |||||||| ||| || ||| | || | | ||||||| | ||||| || Sbjct 165591 AATTCCTTCCTTGTCTTGGATCTTGCTTTTCACGTTCTCAATCGTGTCGTTGGATTCGAC 165532 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 |||| ||||| || || || || || ||||| || ||||||||||| || Sbjct 165531 TTCGAGAGTGATAGTCTTACCAGTGAGGGTCTTGACGAAGATTTGCATCTT 165481 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| ||||| | | ||| ||||| |||||||| || |||||||| |||||||||| Sbjct 165939 ACCACCTCTGAGTCTCAAAACCAAGTGCAATGTTGATTCTTTTTGAATGTTGTAATCAGA 165880 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || || | |||| |||| ||||| || || || ||||||| || ||||| | ||| Sbjct 165879 CAAGGTTCTTCCGTCTTCTAATTGCTTTCCGGCAAAGATGAGTCTTTGTTGGTCTGGTGG 165820 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | | |||||||| ||| ||| ||| | | | | || || | || || || Sbjct 165819 AATTCCTTCCTTGTCTTGGATCTTTGATTTAACGTTTTCAATGGTATCATTGGACTCAAC 165760 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | || ||||| || || || | || || || ||||||||||| Sbjct 165759 CTCAAGAGTAATGGTCTTTCCGGTCAAGGTTTTAACGAAGATTTGCAT 165712 >seq26 Length=133099 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 |||||| || || | ||||||||||||||| || ||||| |||| ||||||||| Sbjct 73289 ACCTCCCCTCAATCTCAACACCAAATGCAAGGTAGAATCCTTCTGAACGCTGTAATCAGA 73230 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || || | | || |||| || || || ||||| || | ||| || || |||||||| Sbjct 73229 CAAGGTTCTTCCATCCTCTAATTGTTTTCCTGCGAAAATCAATCGTTGTTGATCGGCTGG 73170 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | | ||||| || ||||| |||| || | | || ||| | || || || Sbjct 73169 AATCCCTTCCTTATCGGCTATTTTGCTCTTGACGTTCTCGATCGAGTCATTGGACTCTAC 73110 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 || | || ||||| || || || | || || |||||||||||||| || Sbjct 73109 TTCCAAGGTAATGGTCTTACCAGTCAAGGTTTTCACAAAGATTTGCATGTT 73059 >seq151 Length=76492 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| |||||||| | ||||| ||| || | || |||||||| | ||| ||||| | Sbjct 51036 ACCACCTCTTAATCTCAACATCAAGTGAAGAGTTGCATCCTTTTGTACATTATAATCCGA 50977 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 | ||| | | || || | ||||||||||| | || | ||||| || || ||||| Sbjct 50976 TAAAGTTCTTCCATCCTCCAATTGCTTACCAGCATAAATCAAACGCTGTTGATCCGCTGG 50917 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | | ||||| || ||| ||| ||||| | || | | | ||| | || || || Sbjct 50916 AATACCTTCCTTATCTGTGACTTTCTGTTTAACATTCTCAATTGAGTCATTGGACTCAAC 50857 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 ||| | ||||| ||| | || || || ||||| ||||| | |||||| || Sbjct 50856 ATCCAATGTGATCGTTCTACCTGTAAGTGTCTTGACAAATAATTGCATGTT 50806 >seq29 Length=427163 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||||||||| ||||| || | || || | | || |||| ||||| || || || Sbjct 48745 TCCTTTTGAATGTTGTAGTCGGACAAGGTTCTTCCATCTTCTAATTGCTTTCCGGCAAAG 48686 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 ||||||| || || || | ||| | | |||||||| ||| || ||| | || Sbjct 48685 ATGAGTCTTTGTTGATCAGGTGGAATTCCTTCCTTGTCTTGGATCTTGCTTTTCACGTTC 48626 Query 42138 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 42197 | | |||||| | ||||| || || | ||||| || ||||| |||| ||||| || Sbjct 48625 TCGATTGTGTCGTTGGATTCGACTTCAAGAGTGATAGTCTTGCCAGTTAAAGTCTTGACG 48566 Query 42198 AAGATTTGCATTTT 42211 ||||||||||| || Sbjct 48565 AAGATTTGCATGTT 48552 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543208902448160