Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq42 138 1e-27 seq29 116 4e-21 seq82 111 2e-19 >seq42 Length=292872 Score = 138 bits (152), Expect = 1e-27 Identities = 168/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || | |||||| | || || |||| || || |||||||||||||||||||| | Sbjct 166395 ACCTCCCCTCAATCTCAAAACAAGGTGAAGAGTAGACTCTTTTTGAATGTTGTAATCGGA 166336 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || ||| | | ||||| | ||||| || || |||| | | || ||||| ||||| Sbjct 166335 GAGGGTTCTTCCATCTTCCAATTGCTTACCAGCGAAAATCAATCTTTGTTGGTCTGGAGG 166276 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||| ||||| || ||||| || ||| ||| ||| ||| | |||||| || || || Sbjct 166275 AATGCCTTCCTTATCTTGGATCTTTGACTTGACATTCTCGATGGTATCATTGGATTCGAC 166216 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 ||| | || | ||||||||| ||||||||||| || || ||||||||| Sbjct 166215 TTCCAATGTAATGGTCTTGCCAGTCAAAGTTTTAACAAAGATTTGCATT 166167 Score = 131 bits (144), Expect = 2e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || ||||||||||||||||||||||| | | ||| | ||||||| | ||||| ||| Sbjct 165908 GTTGATTCTTTTTGAATGTTGTAATCAGACAAGGTTCTTCCGTCTTCTAATTGCTTTCCG 165849 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | ||||| | || ||||| || ||||||||||| || ||||| || ||| || Sbjct 165848 GCAAAGATGAGTCTTTGTTGGTCTGGTGGAATTCCTTCCTTGTCTTGGATCTTTGATTTA 165789 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || || | |||||| || || || || | ||| | |||||| |||||||| ||| Sbjct 165788 ACGTTTTCAATGGTATCATTGGACTCAACCTCAAGAGTAATGGTCTTTCCGGTCAAGGTT 165729 Query 64427 TTTACGAAAATTTGCAT 64443 || ||||| |||||||| Sbjct 165728 TTAACGAAGATTTGCAT 165712 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || | ||||||||| || || || | || ||||| |||||||||||||| || | | Sbjct 166166 CCTCCTCTCAATCTAAGAACAAGGTGCAATGTGGATTCCTTTTGAATGTTGTAGTCGGAG 166107 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || | ||||||| | || || || ||| |||| | || || || || || ||| Sbjct 166106 AGAGTTCTTCCGTCTTCCAATTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGTGGA 166047 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || ||||| || ||||| || || ||| || || | || || || || ||| Sbjct 166046 ATACCTTCCTTATCTTGAATCTTGCTCTTCACGTTTTCGATGGTGTCGTTGGATTCAACT 165987 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | ||| | ||||| || || | || || ||||| |||||||| Sbjct 165986 TCCAAAGTAATTGTCTTACCAGTGAGGGTCTTGACGAAGATTTGCAT 165940 Score = 82.4 bits (90), Expect = 8e-11 Identities = 159/233 (68%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || | |||||| | || | || | || ||||| ||||| |||||||| || | Sbjct 165711 ACCACCTCTCAATCTCAAGACCAAGTGGAGAGTGGATTCCTTTTGGATGTTGTAGTCGGA 165652 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||| | ||||||| | || || || ||| |||| | || || || || || || Sbjct 165651 CAAGGTTCTTCCGTCTTCCAATTGTTTACCAGCAAAAATCAAACGTTGTTGATCAGGTGG 165592 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTT--ACAACCTCCACTGTATCACCGGCGTCC 64393 ||||||||| || ||||| | | ||||||| || ||| | || || || || Sbjct 165591 AATTCCTTCCTTGTCTTGGA--TCTTGCTTTTCACGTTCTCAATCGTGTCGTTGGATTCG 165534 Query 64394 ACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 ||||| | ||| | ||||| || || | || || ||||| |||||||| || Sbjct 165533 ACTTCGAGAGTGATAGTCTTACCAGTGAGGGTCTTGACGAAGATTTGCATCTT 165481 >seq29 Length=427163 Score = 116 bits (128), Expect = 4e-21 Identities = 157/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 64226 AATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGC 64285 ||||| || || || |||| || ||||| ||||| ||||||||||| | | ||| | Sbjct 49266 AATCTCAGAACAAGGTGAAGAGTTGATTCCTTTTGGATGTTGTAATCGGAAAGGGTTCTG 49207 Query 64286 GCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCT 64345 | ||||| | ||||| || || |||| | || || || || || ||||| || || Sbjct 49206 CCATCTTCCAATTGCTTACCAGCGAAAATCAAACGTTGTTGATCTGGTGGAATCCCCTCC 49147 Query 64346 TTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTT 64405 || ||||| || ||| ||| || ||| | ||| || | || ||||| | ||| Sbjct 49146 TTATCTTGAATCTTTGACTTGACGTTCTCGATTGTGTCGTTAGATTCAACTTCCAAAGTG 49087 Query 64406 ACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 | |||||| || ||||||||||| ||||||||||||||| Sbjct 49086 ATGGTCTTTCCTGTCAAAGTTTTCACGAAAATTTGCATT 49048 Score = 111 bits (122), Expect = 2e-19 Identities = 160/224 (71%), Gaps = 4/224 (2%) Strand=Plus/Minus Query 64228 TCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGC 64287 ||| || || || || | || ||||| |||||||||||||| || | | ||| | | Sbjct 48770 TCTGAGGACAAGGTGGAGAGTGGATTCCTTTTGAATGTTGTAGTCGGACAAGGTTCTTCC 48711 Query 64288 GTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTT 64347 ||||| | ||||| |||||| | ||||| | || || || || ||||||||||| || Sbjct 48710 ATCTTCTAATTGCTTTCCGGCAAAGATGAGTCTTTGTTGATCAGGTGGAATTCCTTCCTT 48651 Query 64348 TTCTTGTATTTTTTGCTTT--ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTT 64405 ||||| | | ||||||| || ||| | ||| || || || ||||| | ||| Sbjct 48650 GTCTTGGA--TCTTGCTTTTCACGTTCTCGATTGTGTCGTTGGATTCGACTTCAAGAGTG 48593 Query 64406 ACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTTAAT 64449 | |||||||| || ||||| || ||||| |||||||| || || Sbjct 48592 ATAGTCTTGCCAGTTAAAGTCTTGACGAAGATTTGCATGTTGAT 48549 >seq82 Length=211372 Score = 111 bits (122), Expect = 2e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || | |||||| | || | || | || ||||| |||||||||||||| || | Sbjct 147705 ACCTCCTCTCAATCTCAAGACCAAGTGCAATGTAGATTCCTTTTGAATGTTGTAGTCAGA 147764 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||| | | ||||| | ||||| |||||| | || | | || || || ||||| Sbjct 147765 CAAGGTTCTGCCATCTTCCAATTGCTTTCCGGCAAAGATCAATCTTTGTTGATCTGGAGG 147824 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||| ||||| || ||||| || ||| ||| ||| ||| | || || || || || Sbjct 147825 AATACCTTCCTTGTCTTGAATCTTTGACTTGACATTCTCGATGGTGTCGTTGGATTCGAC 147884 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 || | ||| | |||||| |||||||| || || ||||||||||||||| Sbjct 147885 CTCCAAAGTGATGGTCTTACCGGTCAAGGTCTTAACGAAAATTTGCATT 147933 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499641215048560