Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20fowleri_20[genbank_20GCA_5F000499105.1_202013-11-25] 574 sequences; 27,791,290 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq82 87.8 2e-12 seq42 86.0 6e-12 >seq82 Length=211372 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| ||| | ||| || || || | | || |||||||||||||||||||| | Sbjct 147706 CCTCCTCTCAATCTCAAGACCAAGTGCAATGTAGATTCCTTTTGAATGTTGTAGTCAGAC 147765 Query 138448 ATAGTAC-GCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | || | || | || || | ||| || |||| | |||| | | ||||| || ||||| Sbjct 147766 AAGGTTCTGCCA-TCTTCCAATTGCTTTCCGGCAAAGATCAATCTTTGTTGATCTGGAGG 147824 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 |||||||| ||||| ||| | |||| || | | || | ||||||| | || || | Sbjct 147825 AATACCTTCCTTGTC-TTGAATCTTTGACTTGACATTCTCGATGGTGTCGTTGGATTCGA 147883 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| | || | || ||||| |||| || || || ||||| ||||| Sbjct 147884 CCTCCAAAGTGATGGTCTTACCGGTCAAGGTCTTAACGAAAATTTGCAT 147932 >seq42 Length=292872 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| ||| | ||| || || || | | || |||||||| |||||||||||| | Sbjct 165710 CCACCTCTCAATCTCAAGACCAAGTGGAGAGTGGATTCCTTTTGGATGTTGTAGTCGGAC 165651 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || | ||| || | ||||||||| | | | || | ||| ||||| || || || Sbjct 165650 AAGGTTCTTCCGTCTTCCAATTGTTTACCAGCAAAAATCAAACGTTGTTGATCAGGTGGA 165591 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||| ||||| ||| || ||| | | || | |||||| | || || || Sbjct 165590 ATTCCTTCCTTGTCTTGGATCTTGCTTTTCACGTTCTCAATCGTGTCGTTGGATTCGACT 165531 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| || | || |||||||| || || || || || || ||||| Sbjct 165530 TCGAGAGTGATAGTCTTACCAGTGAGGGTCTTGACGAAGATTTGCAT 165484 Score = 84.2 bits (92), Expect = 2e-11 Identities = 137/195 (70%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || ||||||||||||||||||||| | ||| | ||| || | ||||||||| | | Sbjct 166133 GATTCCTTTTGAATGTTGTAGTCGGAGAGAGTTCTTCCGTCTTCCAATTGTTTACCAGCA 166074 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGT-TTTAA 138539 | || | ||| ||||| || || || |||||||| || || ||| | || | || | Sbjct 166073 AAAATCAAACGTTGTTGATCTGGTGGAATACCTTCCTTATC-TTGAATCTTGCTCTTCAC 166015 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 | ||| | ||||||| | || || || || | || | || |||||||| || || || Sbjct 166014 GTTTTCGATGGTGTCGTTGGATTCAACTTCCAAAGTAATTGTCTTACCAGTGAGGGTCTT 165955 Query 138600 TACAAAAATCTGCAT 138614 || || || ||||| Sbjct 165954 GACGAAGATTTGCAT 165940 Score = 82.4 bits (90), Expect = 8e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 138402 CAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTC 138461 |||||| || || | |||| || |||||||||||||| || || || | ||| Sbjct 165924 CAAAACCAAGTGCAATGTTGATTCTTTTTGAATGTTGTAATCAGACAAGGTTCTTCCGTC 165865 Query 138462 CTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTC 138521 || | ||| || |||| | |||| || | |||||||| || || || ||||| ||||| Sbjct 165864 TTCTAATTGCTTTCCGGCAAAGATGAGTCTTTGTTGGTCTGGTGGAATTCCTTCCTTGTC 165805 Query 138522 GGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGT 138581 ||| ||| ||| | | ||| | ||| || | ||||| ||||| | || | || Sbjct 165804 TTGGATCTTTGATTTAACGTTTTCAATGGTATCATTGGACTCAACCTCAAGAGTAATGGT 165745 Query 138582 TTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || || |||| ||||| || || || ||||| Sbjct 165744 CTTTCCGGTCAAGGTTTTAACGAAGATTTGCAT 165712 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496258839317280